Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC18.25■□□□□ 0.51
PKNOX1P55347 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
PKNOX1P55347 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.25■□□□□ 0.51
PKNOX1P55347 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.25■□□□□ 0.51
PKNOX1P55347 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PKNOX1P55347 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PKNOX1P55347 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 HTR7P1-201ENST00000538670 1336 ntBASIC18.24■□□□□ 0.51
PKNOX1P55347 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.24■□□□□ 0.51
PKNOX1P55347 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PKNOX1P55347 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.24■□□□□ 0.51
PKNOX1P55347 AC004951.3-201ENST00000418645 1148 ntBASIC18.24■□□□□ 0.51
PKNOX1P55347 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.24■□□□□ 0.51
PKNOX1P55347 AC091390.4-202ENST00000476426 537 ntBASIC18.24■□□□□ 0.51
PKNOX1P55347 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
PKNOX1P55347 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PKNOX1P55347 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC18.24■□□□□ 0.51
PKNOX1P55347 AC006058.3-201ENST00000606217 1069 ntBASIC18.24■□□□□ 0.51
PKNOX1P55347 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
PKNOX1P55347 MYC-208ENST00000641036 567 ntBASIC18.24■□□□□ 0.51
PKNOX1P55347 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.24■□□□□ 0.51
PKNOX1P55347 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.24■□□□□ 0.51
PKNOX1P55347 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PKNOX1P55347 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
PKNOX1P55347 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.24■□□□□ 0.51
PKNOX1P55347 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PKNOX1P55347 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
PKNOX1P55347 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
PKNOX1P55347 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.23■□□□□ 0.51
PKNOX1P55347 AC126763.1-201ENST00000552015 2118 ntBASIC18.23■□□□□ 0.51
PKNOX1P55347 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.23■□□□□ 0.51
PKNOX1P55347 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.23■□□□□ 0.51
PKNOX1P55347 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
PKNOX1P55347 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.23■□□□□ 0.51
PKNOX1P55347 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.23■□□□□ 0.51
PKNOX1P55347 RPS2P4-201ENST00000476944 856 ntBASIC18.23■□□□□ 0.51
PKNOX1P55347 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.23■□□□□ 0.51
PKNOX1P55347 AC026271.3-201ENST00000571884 352 ntBASIC18.23■□□□□ 0.51
PKNOX1P55347 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.23■□□□□ 0.51
PKNOX1P55347 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PKNOX1P55347 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 AL162741.1-201ENST00000565563 1558 ntBASIC18.22■□□□□ 0.51
PKNOX1P55347 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PKNOX1P55347 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.22■□□□□ 0.51
PKNOX1P55347 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.22■□□□□ 0.51
PKNOX1P55347 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.22■□□□□ 0.51
PKNOX1P55347 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.22■□□□□ 0.51
PKNOX1P55347 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PKNOX1P55347 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PKNOX1P55347 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.22■□□□□ 0.51
PKNOX1P55347 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.22■□□□□ 0.51
PKNOX1P55347 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.22■□□□□ 0.51
PKNOX1P55347 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PKNOX1P55347 KRT16P1-201ENST00000399124 1418 ntBASIC18.22■□□□□ 0.51
PKNOX1P55347 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms