Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH6P52701 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC25.66■■□□□ 1.7
MSH6P52701 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
MSH6P52701 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
MSH6P52701 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
MSH6P52701 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 KRT18P28-201ENST00000453838 1332 ntBASIC25.65■■□□□ 1.7
MSH6P52701 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC25.65■■□□□ 1.7
MSH6P52701 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC25.65■■□□□ 1.7
MSH6P52701 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC25.65■■□□□ 1.7
MSH6P52701 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 RFPL4AP1-201ENST00000530883 850 ntBASIC25.65■■□□□ 1.7
MSH6P52701 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC25.65■■□□□ 1.7
MSH6P52701 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
MSH6P52701 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
MSH6P52701 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
MSH6P52701 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC25.64■■□□□ 1.7
MSH6P52701 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC25.64■■□□□ 1.7
MSH6P52701 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
MSH6P52701 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
MSH6P52701 RAB17-203ENST00000409576 466 ntTSL 3 BASIC25.64■■□□□ 1.69
MSH6P52701 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC25.64■■□□□ 1.69
MSH6P52701 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC25.64■■□□□ 1.69
MSH6P52701 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.69
MSH6P52701 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
MSH6P52701 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH6P52701 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH6P52701 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH6P52701 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC25.63■■□□□ 1.69
MSH6P52701 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC25.63■■□□□ 1.69
MSH6P52701 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC25.63■■□□□ 1.69
MSH6P52701 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH6P52701 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH6P52701 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC25.63■■□□□ 1.69
MSH6P52701 AC008735.5-201ENST00000623544 497 ntBASIC25.63■■□□□ 1.69
MSH6P52701 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC25.63■■□□□ 1.69
MSH6P52701 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
MSH6P52701 KRT8P32-201ENST00000512863 1461 ntBASIC25.63■■□□□ 1.69
MSH6P52701 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC25.62■■□□□ 1.69
MSH6P52701 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC25.62■■□□□ 1.69
MSH6P52701 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 AC211486.1-202ENST00000416371 468 ntBASIC25.62■■□□□ 1.69
MSH6P52701 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC25.62■■□□□ 1.69
MSH6P52701 AC211476.1-201ENST00000503899 468 ntBASIC25.62■■□□□ 1.69
MSH6P52701 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC25.62■■□□□ 1.69
MSH6P52701 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC25.62■■□□□ 1.69
MSH6P52701 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MSH6P52701 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC25.62■■□□□ 1.69
MSH6P52701 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC25.62■■□□□ 1.69
MSH6P52701 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC25.62■■□□□ 1.69
MSH6P52701 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC25.61■■□□□ 1.69
MSH6P52701 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH6P52701 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
MSH6P52701 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
MSH6P52701 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 AP005117.1-201ENST00000584346 1413 ntBASIC25.61■■□□□ 1.69
MSH6P52701 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH6P52701 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 HTR5BP-201ENST00000430851 1154 ntBASIC25.61■■□□□ 1.69
MSH6P52701 AC007967.2-201ENST00000432613 625 ntBASIC25.61■■□□□ 1.69
MSH6P52701 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC25.61■■□□□ 1.69
MSH6P52701 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC25.61■■□□□ 1.69
MSH6P52701 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC25.61■■□□□ 1.69
MSH6P52701 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 AC025062.2-201ENST00000605477 670 ntBASIC25.61■■□□□ 1.69
MSH6P52701 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 INTS4P1-201ENST00000438455 1935 ntBASIC25.61■■□□□ 1.69
MSH6P52701 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
MSH6P52701 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
MSH6P52701 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms