Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.03■□□□□ 0.48
HNF4AP41235 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.03■□□□□ 0.48
HNF4AP41235 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.03■□□□□ 0.48
HNF4AP41235 BX088651.1-201ENST00000540551 451 ntBASIC18.03■□□□□ 0.48
HNF4AP41235 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 AC008622.2-201ENST00000617006 1229 ntBASIC18.03■□□□□ 0.48
HNF4AP41235 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.03■□□□□ 0.48
HNF4AP41235 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.03■□□□□ 0.48
HNF4AP41235 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HNF4AP41235 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HNF4AP41235 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.03■□□□□ 0.48
HNF4AP41235 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.03■□□□□ 0.48
HNF4AP41235 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HNF4AP41235 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 AC009113.1-201ENST00000570267 2443 ntBASIC18.02■□□□□ 0.48
HNF4AP41235 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 CYP2D8P-201ENST00000433633 1490 ntBASIC18.02■□□□□ 0.48
HNF4AP41235 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.02■□□□□ 0.48
HNF4AP41235 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.48
HNF4AP41235 KRT8P45-201ENST00000414328 1447 ntBASIC18.02■□□□□ 0.48
HNF4AP41235 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.02■□□□□ 0.48
HNF4AP41235 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.02■□□□□ 0.48
HNF4AP41235 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.02■□□□□ 0.48
HNF4AP41235 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.02■□□□□ 0.48
HNF4AP41235 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.02■□□□□ 0.48
HNF4AP41235 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.02■□□□□ 0.48
HNF4AP41235 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.02■□□□□ 0.48
HNF4AP41235 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HNF4AP41235 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.02■□□□□ 0.47
HNF4AP41235 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.02■□□□□ 0.47
HNF4AP41235 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.01■□□□□ 0.47
HNF4AP41235 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.01■□□□□ 0.47
HNF4AP41235 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.01■□□□□ 0.47
HNF4AP41235 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 NEFHP1-201ENST00000412845 2629 ntBASIC18.01■□□□□ 0.47
HNF4AP41235 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.01■□□□□ 0.47
HNF4AP41235 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.01■□□□□ 0.47
HNF4AP41235 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.01■□□□□ 0.47
HNF4AP41235 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.01■□□□□ 0.47
HNF4AP41235 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.01■□□□□ 0.47
HNF4AP41235 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.01■□□□□ 0.47
HNF4AP41235 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HNF4AP41235 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.01■□□□□ 0.47
HNF4AP41235 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.01■□□□□ 0.47
HNF4AP41235 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.01■□□□□ 0.47
HNF4AP41235 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HNF4AP41235 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HNF4AP41235 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
HNF4AP41235 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 AC104581.1-202ENST00000635932 2618 ntBASIC18■□□□□ 0.47
HNF4AP41235 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HNF4AP41235 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 AL023284.2-201ENST00000405850 579 ntBASIC18■□□□□ 0.47
HNF4AP41235 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18■□□□□ 0.47
HNF4AP41235 MCCD1P1-208ENST00000445732 328 ntBASIC18■□□□□ 0.47
HNF4AP41235 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC18■□□□□ 0.47
HNF4AP41235 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18■□□□□ 0.47
HNF4AP41235 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18■□□□□ 0.47
HNF4AP41235 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
HNF4AP41235 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18■□□□□ 0.47
HNF4AP41235 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms