Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL8A1P27658 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
COL8A1P27658 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 TREX1-205ENST00000625293 1783 ntBASIC16.19■□□□□ 0.18
COL8A1P27658 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.19■□□□□ 0.18
COL8A1P27658 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.19■□□□□ 0.18
COL8A1P27658 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.19■□□□□ 0.18
COL8A1P27658 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.19■□□□□ 0.18
COL8A1P27658 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
COL8A1P27658 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.19■□□□□ 0.18
COL8A1P27658 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC16.19■□□□□ 0.18
COL8A1P27658 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
COL8A1P27658 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL8A1P27658 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL8A1P27658 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.18■□□□□ 0.18
COL8A1P27658 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.18■□□□□ 0.18
COL8A1P27658 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.18■□□□□ 0.18
COL8A1P27658 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL8A1P27658 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.18■□□□□ 0.18
COL8A1P27658 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.18■□□□□ 0.18
COL8A1P27658 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.18■□□□□ 0.18
COL8A1P27658 KRT18P23-201ENST00000435622 1283 ntBASIC16.18■□□□□ 0.18
COL8A1P27658 DNAJB3-202ENST00000449667 1266 ntBASIC16.18■□□□□ 0.18
COL8A1P27658 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL8A1P27658 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.18■□□□□ 0.18
COL8A1P27658 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.18■□□□□ 0.18
COL8A1P27658 BNIP3P18-201ENST00000593976 575 ntBASIC16.18■□□□□ 0.18
COL8A1P27658 AC010240.3-201ENST00000607688 395 ntBASIC16.18■□□□□ 0.18
COL8A1P27658 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.18■□□□□ 0.18
COL8A1P27658 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.18■□□□□ 0.18
COL8A1P27658 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
COL8A1P27658 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL8A1P27658 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.18■□□□□ 0.18
COL8A1P27658 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
COL8A1P27658 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.17■□□□□ 0.18
COL8A1P27658 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.17■□□□□ 0.18
COL8A1P27658 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
COL8A1P27658 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.17■□□□□ 0.18
COL8A1P27658 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 IGHGP-201ENST00000390555 1178 ntBASIC16.17■□□□□ 0.18
COL8A1P27658 POM121L3P-201ENST00000419331 1163 ntBASIC16.17■□□□□ 0.18
COL8A1P27658 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.17■□□□□ 0.18
COL8A1P27658 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
COL8A1P27658 AC011840.4-201ENST00000578471 627 ntBASIC16.17■□□□□ 0.18
COL8A1P27658 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL8A1P27658 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.17■□□□□ 0.18
COL8A1P27658 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL8A1P27658 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms