Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.58■□□□□ 0.72
BDNFP23560 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
BDNFP23560 AC116407.4-201ENST00000623319 1061 ntBASIC19.58■□□□□ 0.72
BDNFP23560 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
BDNFP23560 AL391807.1-203ENST00000604392 2365 ntBASIC19.58■□□□□ 0.72
BDNFP23560 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
BDNFP23560 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
BDNFP23560 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
BDNFP23560 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC19.58■□□□□ 0.72
BDNFP23560 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.58■□□□□ 0.72
BDNFP23560 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
BDNFP23560 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.57■□□□□ 0.72
BDNFP23560 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.57■□□□□ 0.72
BDNFP23560 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 AL136038.4-201ENST00000603606 1261 ntBASIC19.57■□□□□ 0.72
BDNFP23560 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.57■□□□□ 0.72
BDNFP23560 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.57■□□□□ 0.72
BDNFP23560 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
BDNFP23560 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.57■□□□□ 0.72
BDNFP23560 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.57■□□□□ 0.72
BDNFP23560 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.56■□□□□ 0.72
BDNFP23560 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
BDNFP23560 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.56■□□□□ 0.72
BDNFP23560 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.56■□□□□ 0.72
BDNFP23560 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.56■□□□□ 0.72
BDNFP23560 HLA-F-220ENST00000434407 884 ntBASIC19.56■□□□□ 0.72
BDNFP23560 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 KRT18P41-201ENST00000518924 1277 ntBASIC19.56■□□□□ 0.72
BDNFP23560 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.56■□□□□ 0.72
BDNFP23560 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
BDNFP23560 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.56■□□□□ 0.72
BDNFP23560 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
BDNFP23560 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
BDNFP23560 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.56■□□□□ 0.72
BDNFP23560 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
BDNFP23560 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.56■□□□□ 0.72
BDNFP23560 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
BDNFP23560 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
BDNFP23560 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.55■□□□□ 0.72
BDNFP23560 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.55■□□□□ 0.72
BDNFP23560 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.55■□□□□ 0.72
BDNFP23560 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.55■□□□□ 0.72
BDNFP23560 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.55■□□□□ 0.72
BDNFP23560 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
BDNFP23560 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 AC099343.3-201ENST00000605834 2503 ntBASIC19.55■□□□□ 0.72
BDNFP23560 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.55■□□□□ 0.72
BDNFP23560 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
BDNFP23560 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.54■□□□□ 0.72
BDNFP23560 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 AL499627.1-201ENST00000569373 2188 ntBASIC19.54■□□□□ 0.72
BDNFP23560 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.54■□□□□ 0.72
BDNFP23560 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
BDNFP23560 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.54■□□□□ 0.72
BDNFP23560 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms