Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HMGA1P17096 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
HMGA1P17096 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGA1P17096 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGA1P17096 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGA1P17096 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGA1P17096 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGA1P17096 PRELID1P1-202ENST00000567272 903 ntBASIC19.25■□□□□ 0.67
HMGA1P17096 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGA1P17096 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGA1P17096 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGA1P17096 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGA1P17096 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGA1P17096 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HMGA1P17096 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGA1P17096 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HMGA1P17096 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HMGA1P17096 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGA1P17096 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGA1P17096 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGA1P17096 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.24■□□□□ 0.67
HMGA1P17096 NUS1P1-201ENST00000446295 882 ntBASIC19.24■□□□□ 0.67
HMGA1P17096 TOB2P1-201ENST00000469761 992 ntBASIC19.24■□□□□ 0.67
HMGA1P17096 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGA1P17096 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGA1P17096 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGA1P17096 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HMGA1P17096 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
HMGA1P17096 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGA1P17096 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
HMGA1P17096 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGA1P17096 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HMGA1P17096 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGA1P17096 MIR149-201ENST00000384879 89 ntBASIC19.23■□□□□ 0.67
HMGA1P17096 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGA1P17096 LINC00265-3P-201ENST00000447588 903 ntBASIC19.23■□□□□ 0.67
HMGA1P17096 RN7SL606P-201ENST00000472779 293 ntBASIC19.23■□□□□ 0.67
HMGA1P17096 PP7080-204ENST00000510714 601 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGA1P17096 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGA1P17096 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGA1P17096 IGHV3-41-201ENST00000613121 348 ntBASIC19.23■□□□□ 0.67
HMGA1P17096 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
HMGA1P17096 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.23■□□□□ 0.67
HMGA1P17096 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HMGA1P17096 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HMGA1P17096 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGA1P17096 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.23■□□□□ 0.67
HMGA1P17096 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
HMGA1P17096 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 AL353692.3-201ENST00000407031 1396 ntBASIC19.22■□□□□ 0.67
HMGA1P17096 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGA1P17096 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGA1P17096 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
HMGA1P17096 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGA1P17096 AP000867.3-201ENST00000524675 377 ntBASIC19.22■□□□□ 0.67
HMGA1P17096 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms