Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.67■□□□□ 0.58
VIMP08670 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.67■□□□□ 0.58
VIMP08670 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 AC093677.2-201ENST00000600169 1863 ntBASIC18.67■□□□□ 0.58
VIMP08670 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VIMP08670 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VIMP08670 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
VIMP08670 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
VIMP08670 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VIMP08670 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.67■□□□□ 0.58
VIMP08670 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VIMP08670 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.67■□□□□ 0.58
VIMP08670 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VIMP08670 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VIMP08670 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VIMP08670 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VIMP08670 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VIMP08670 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.66■□□□□ 0.58
VIMP08670 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.66■□□□□ 0.58
VIMP08670 AC108860.2-201ENST00000562760 2183 ntBASIC18.66■□□□□ 0.58
VIMP08670 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
VIMP08670 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.66■□□□□ 0.58
VIMP08670 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.66■□□□□ 0.58
VIMP08670 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VIMP08670 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.66■□□□□ 0.58
VIMP08670 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.66■□□□□ 0.58
VIMP08670 REXO1L9P-201ENST00000604264 2108 ntBASIC18.66■□□□□ 0.58
VIMP08670 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.66■□□□□ 0.58
VIMP08670 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VIMP08670 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VIMP08670 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
VIMP08670 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VIMP08670 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.66■□□□□ 0.58
VIMP08670 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VIMP08670 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.65■□□□□ 0.58
VIMP08670 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 AC069236.1-201ENST00000604339 616 ntBASIC18.65■□□□□ 0.58
VIMP08670 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 HEIH-201ENST00000623091 1652 ntBASIC18.65■□□□□ 0.58
VIMP08670 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.65■□□□□ 0.58
VIMP08670 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 AD000864.1-201ENST00000624076 2295 ntBASIC18.65■□□□□ 0.58
VIMP08670 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VIMP08670 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
VIMP08670 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
VIMP08670 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.64■□□□□ 0.58
VIMP08670 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VIMP08670 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VIMP08670 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms