Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
LDLRP01130 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
LDLRP01130 AC073508.3-201ENST00000619697 1419 ntBASIC17.97■□□□□ 0.47
LDLRP01130 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.97■□□□□ 0.47
LDLRP01130 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
LDLRP01130 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
LDLRP01130 AC116351.2-201ENST00000606540 1585 ntBASIC17.96■□□□□ 0.47
LDLRP01130 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LDLRP01130 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.96■□□□□ 0.47
LDLRP01130 DUX4L26-201ENST00000489078 1255 ntBASIC17.96■□□□□ 0.47
LDLRP01130 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LDLRP01130 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.96■□□□□ 0.47
LDLRP01130 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
LDLRP01130 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
LDLRP01130 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.96■□□□□ 0.47
LDLRP01130 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
LDLRP01130 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
LDLRP01130 KRT18P22-201ENST00000402024 1347 ntBASIC17.96■□□□□ 0.46
LDLRP01130 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.96■□□□□ 0.46
LDLRP01130 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
LDLRP01130 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.95■□□□□ 0.46
LDLRP01130 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 OR6D1P-202ENST00000641007 5290 ntBASIC17.95■□□□□ 0.46
LDLRP01130 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.95■□□□□ 0.46
LDLRP01130 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 MIR1238-201ENST00000408483 83 ntBASIC17.95■□□□□ 0.46
LDLRP01130 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.95■□□□□ 0.46
LDLRP01130 REXO1L10P-201ENST00000615707 1290 ntBASIC17.95■□□□□ 0.46
LDLRP01130 AL121829.2-201ENST00000620908 328 ntBASIC17.95■□□□□ 0.46
LDLRP01130 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.95■□□□□ 0.46
LDLRP01130 ABALON-201ENST00000629058 1903 ntBASIC17.95■□□□□ 0.46
LDLRP01130 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.95■□□□□ 0.46
LDLRP01130 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC17.95■□□□□ 0.46
LDLRP01130 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
LDLRP01130 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
LDLRP01130 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
LDLRP01130 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.94■□□□□ 0.46
LDLRP01130 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
LDLRP01130 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
LDLRP01130 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC17.94■□□□□ 0.46
LDLRP01130 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
LDLRP01130 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
LDLRP01130 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC17.94■□□□□ 0.46
LDLRP01130 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC17.94■□□□□ 0.46
LDLRP01130 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms