Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SDC3O75056 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 FP475955.4-201ENST00000623131 1990 ntBASIC18.15■□□□□ 0.5
SDC3O75056 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 AC141586.3-201ENST00000562166 1838 ntBASIC18.15■□□□□ 0.5
SDC3O75056 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.15■□□□□ 0.5
SDC3O75056 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.15■□□□□ 0.5
SDC3O75056 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 PVRIG2P-201ENST00000435460 978 ntBASIC18.15■□□□□ 0.5
SDC3O75056 EMBP1-201ENST00000458200 901 ntBASIC18.15■□□□□ 0.5
SDC3O75056 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.15■□□□□ 0.5
SDC3O75056 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.15■□□□□ 0.5
SDC3O75056 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.15■□□□□ 0.5
SDC3O75056 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.15■□□□□ 0.5
SDC3O75056 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SDC3O75056 IGHV3-41-201ENST00000613121 348 ntBASIC18.15■□□□□ 0.5
SDC3O75056 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.15■□□□□ 0.5
SDC3O75056 AFG3L1P-217ENST00000557444 2447 ntBASIC18.15■□□□□ 0.5
SDC3O75056 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.15■□□□□ 0.5
SDC3O75056 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.15■□□□□ 0.5
SDC3O75056 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
SDC3O75056 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SDC3O75056 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.15■□□□□ 0.5
SDC3O75056 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SDC3O75056 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.14■□□□□ 0.49
SDC3O75056 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC18.14■□□□□ 0.49
SDC3O75056 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.14■□□□□ 0.49
SDC3O75056 AC138894.3-201ENST00000603787 634 ntBASIC18.14■□□□□ 0.49
SDC3O75056 AL390719.2-201ENST00000606993 987 ntBASIC18.14■□□□□ 0.49
SDC3O75056 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.14■□□□□ 0.49
SDC3O75056 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.14■□□□□ 0.49
SDC3O75056 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.14■□□□□ 0.49
SDC3O75056 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
SDC3O75056 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 KRT8P10-201ENST00000450021 1447 ntBASIC18.14■□□□□ 0.49
SDC3O75056 LINC00167-201ENST00000530583 1419 ntBASIC18.14■□□□□ 0.49
SDC3O75056 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SDC3O75056 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SDC3O75056 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
SDC3O75056 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.13■□□□□ 0.49
SDC3O75056 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC3O75056 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.13■□□□□ 0.49
SDC3O75056 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC3O75056 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC3O75056 FDX1P1-201ENST00000449115 551 ntBASIC18.13■□□□□ 0.49
SDC3O75056 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC18.13■□□□□ 0.49
SDC3O75056 AC091304.2-201ENST00000564639 760 ntBASIC18.13■□□□□ 0.49
SDC3O75056 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC3O75056 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.13■□□□□ 0.49
SDC3O75056 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.13■□□□□ 0.49
SDC3O75056 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.13■□□□□ 0.49
SDC3O75056 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SDC3O75056 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.12■□□□□ 0.49
SDC3O75056 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.12■□□□□ 0.49
SDC3O75056 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
SDC3O75056 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SDC3O75056 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms