Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC3O15379 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HDAC3O15379 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.11■□□□□ 0.49
HDAC3O15379 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.11■□□□□ 0.49
HDAC3O15379 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 REXO1L9P-201ENST00000604264 2108 ntBASIC18.11■□□□□ 0.49
HDAC3O15379 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
HDAC3O15379 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HDAC3O15379 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HDAC3O15379 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC3O15379 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HDAC3O15379 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.1■□□□□ 0.49
HDAC3O15379 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.1■□□□□ 0.49
HDAC3O15379 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC3O15379 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC3O15379 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 AC133041.1-202ENST00000642053 222 ntBASIC18.1■□□□□ 0.49
HDAC3O15379 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC3O15379 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.1■□□□□ 0.49
HDAC3O15379 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HDAC3O15379 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HDAC3O15379 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
HDAC3O15379 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HDAC3O15379 MYLKP1-201ENST00000509077 1580 ntBASIC18.09■□□□□ 0.49
HDAC3O15379 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.09■□□□□ 0.49
HDAC3O15379 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.09■□□□□ 0.49
HDAC3O15379 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.09■□□□□ 0.49
HDAC3O15379 AC069152.1-201ENST00000438030 544 ntBASIC18.09■□□□□ 0.49
HDAC3O15379 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.09■□□□□ 0.49
HDAC3O15379 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.09■□□□□ 0.49
HDAC3O15379 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.09■□□□□ 0.49
HDAC3O15379 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.09■□□□□ 0.49
HDAC3O15379 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.09■□□□□ 0.49
HDAC3O15379 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.09■□□□□ 0.49
HDAC3O15379 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.09■□□□□ 0.49
HDAC3O15379 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HDAC3O15379 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC3O15379 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC3O15379 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDAC3O15379 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.08■□□□□ 0.49
HDAC3O15379 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms