Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL6A5A8TX70 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 AC004449.1-201ENST00000564240 433 ntBASIC14.37□□□□□ -0.11
COL6A5A8TX70 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 NKAPP1-205ENST00000585790 367 ntBASIC14.37□□□□□ -0.11
COL6A5A8TX70 AC092720.2-201ENST00000602388 1665 ntBASIC14.37□□□□□ -0.11
COL6A5A8TX70 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC14.37□□□□□ -0.11
COL6A5A8TX70 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AC008556.1-201ENST00000610908 2040 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 FEM1AP4-201ENST00000443167 1987 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AL049796.1-201ENST00000565336 1766 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AC022494.1-201ENST00000466044 728 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 CR383656.12-201ENST00000549567 513 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AL513210.1-201ENST00000629608 234 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AC097374.2-201ENST00000618617 1306 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AC069262.1-201ENST00000539058 672 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 AQP6-203ENST00000551733 849 ntTSL 3 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AL606495.2-201ENST00000605867 535 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 AL391422.3-201ENST00000603791 2761 ntBASIC14.36□□□□□ -0.11
COL6A5A8TX70 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
COL6A5A8TX70 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC14.35□□□□□ -0.11
COL6A5A8TX70 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL6A5A8TX70 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
COL6A5A8TX70 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 STOM-202ENST00000347359 870 ntTSL 2 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
COL6A5A8TX70 MTDHP4-201ENST00000600287 670 ntBASIC14.34□□□□□ -0.11
COL6A5A8TX70 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL6A5A8TX70 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms