Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 AC005332.8-201ENST00000622750 2735 ntBASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
SENP3-EIF4A1A0A087X0R7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC25.08■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC25.08■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC093458.2-201ENST00000623150 629 ntBASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AL031598.1-201ENST00000561511 1773 ntBASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC25.06■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ADK-206ENST00000541550 2222 ntTSL 2 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 COPE-203ENST00000351079 907 ntTSL 2 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 TSPY21P-201ENST00000433481 731 ntBASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 BX664615.1-201ENST00000443558 458 ntBASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 AP000550.4-202ENST00000639755 178 ntBASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC25.05■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 INGX-201ENST00000359239 846 ntBASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC25.04■■□□□ 1.6
SENP3-EIF4A1A0A087X0R7 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC25.04■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms