Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 GPAT2P1-201ENST00000444924 1672 ntBASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 EMBP1-201ENST00000458200 901 ntBASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 AL162741.1-201ENST00000565563 1558 ntBASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 AC009237.14-201ENST00000609975 1594 ntBASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.36□□□□□ -0.11
NOTCH3Q9UM47 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 LBX2-AS1-202ENST00000603175 2083 ntBASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 CHCHD2P8-201ENST00000429873 447 ntBASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 FAAHP1-202ENST00000446499 1238 ntBASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 MIR4674-201ENST00000582457 87 ntBASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 AC011498.5-201ENST00000592027 486 ntBASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC14.35□□□□□ -0.11
NOTCH3Q9UM47 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 HCG11-201ENST00000411553 5696 ntBASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 AC073130.3-201ENST00000624389 2278 ntBASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.34□□□□□ -0.11
NOTCH3Q9UM47 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms