Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 GRAMD4P1-201ENST00000435181 1110 ntBASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC35.3■■■■□ 3.24
SHROOM4Q9ULL8 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 UBQLN4P1-201ENST00000461599 1801 ntBASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 LSM5-204ENST00000409909 740 ntTSL 2 BASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 CCNC-219ENST00000627680 896 ntTSL 5 BASIC35.29■■■■□ 3.24
SHROOM4Q9ULL8 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 AC112497.1-201ENST00000624824 639 ntBASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC35.28■■■■□ 3.24
SHROOM4Q9ULL8 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 ENSA-205ENST00000361532 792 ntTSL 2 BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 AL031284.1-201ENST00000419297 478 ntBASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 AC141586.3-201ENST00000562166 1838 ntBASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 AL592071.1-201ENST00000611956 408 ntBASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC35.27■■■■□ 3.24
SHROOM4Q9ULL8 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC35.26■■■■□ 3.24
SHROOM4Q9ULL8 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.24
SHROOM4Q9ULL8 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC35.26■■■■□ 3.23
SHROOM4Q9ULL8 MED22-202ENST00000371999 987 ntTSL 3 BASIC35.26■■■■□ 3.23
SHROOM4Q9ULL8 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC35.26■■■■□ 3.23
SHROOM4Q9ULL8 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC35.26■■■■□ 3.23
SHROOM4Q9ULL8 AC093484.2-201ENST00000580996 2166 ntBASIC35.26■■■■□ 3.23
SHROOM4Q9ULL8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC35.26■■■■□ 3.23
SHROOM4Q9ULL8 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 ELP6-205ENST00000439305 880 ntTSL 2 BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 AL355385.1-201ENST00000606123 409 ntBASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC35.25■■■■□ 3.23
SHROOM4Q9ULL8 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 PMS2P7-201ENST00000506558 1336 ntBASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 FEM1AP3-201ENST00000403722 1741 ntBASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 AL109659.2-201ENST00000606809 1674 ntBASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC35.24■■■■□ 3.23
SHROOM4Q9ULL8 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 POLD2P1-201ENST00000511220 997 ntBASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC35.23■■■■□ 3.23
SHROOM4Q9ULL8 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms