Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 GCSHP5-201ENST00000443090 522 ntBASIC16.64■□□□□ 0.25
VSX1Q9NZR4 NUDT16P1-203ENST00000513809 620 ntBASIC16.64■□□□□ 0.25
VSX1Q9NZR4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 AL109659.2-201ENST00000606809 1674 ntBASIC16.64■□□□□ 0.25
VSX1Q9NZR4 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 AC026471.1-201ENST00000564629 3026 ntBASIC16.64■□□□□ 0.25
VSX1Q9NZR4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.64■□□□□ 0.25
VSX1Q9NZR4 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 RPS2P55-201ENST00000397318 883 ntBASIC16.63■□□□□ 0.25
VSX1Q9NZR4 AC012618.2-201ENST00000428058 849 ntBASIC16.63■□□□□ 0.25
VSX1Q9NZR4 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 AC107956.1-201ENST00000494359 873 ntBASIC16.63■□□□□ 0.25
VSX1Q9NZR4 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 AP001412.1-201ENST00000608405 714 ntBASIC16.63■□□□□ 0.25
VSX1Q9NZR4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.63■□□□□ 0.25
VSX1Q9NZR4 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 ABHD17AP1-201ENST00000358206 933 ntBASIC16.62■□□□□ 0.25
VSX1Q9NZR4 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 KRT18P41-201ENST00000518924 1277 ntBASIC16.62■□□□□ 0.25
VSX1Q9NZR4 AC008622.2-201ENST00000617006 1229 ntBASIC16.62■□□□□ 0.25
VSX1Q9NZR4 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VSX1Q9NZR4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VSX1Q9NZR4 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms