Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 MYC-208ENST00000641036 567 ntBASIC19.25■□□□□ 0.67
PCDH9Q9HC56 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PCDH9Q9HC56 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 UNC93B2-201ENST00000285383 730 ntBASIC19.24■□□□□ 0.67
PCDH9Q9HC56 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 RBM17P1-201ENST00000453646 1190 ntBASIC19.24■□□□□ 0.67
PCDH9Q9HC56 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 AL355075.4-201ENST00000554988 638 ntBASIC19.24■□□□□ 0.67
PCDH9Q9HC56 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PCDH9Q9HC56 AL133373.2-201ENST00000623187 2828 ntBASIC19.24■□□□□ 0.67
PCDH9Q9HC56 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 AC097488.1-201ENST00000507834 756 ntBASIC19.23■□□□□ 0.67
PCDH9Q9HC56 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 SLC25A1P4-201ENST00000567977 778 ntBASIC19.23■□□□□ 0.67
PCDH9Q9HC56 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 KRT8P45-201ENST00000414328 1447 ntBASIC19.23■□□□□ 0.67
PCDH9Q9HC56 AC112777.1-201ENST00000540175 1423 ntBASIC19.23■□□□□ 0.67
PCDH9Q9HC56 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PCDH9Q9HC56 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 CKBP1-201ENST00000565489 1086 ntBASIC19.22■□□□□ 0.67
PCDH9Q9HC56 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.22■□□□□ 0.67
PCDH9Q9HC56 AL357033.4-201ENST00000617703 1807 ntBASIC19.22■□□□□ 0.67
PCDH9Q9HC56 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PCDH9Q9HC56 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms