Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 DGCR10-201ENST00000609839 495 ntBASIC19.19■□□□□ 0.66
USP29Q9HBJ7 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 KRT8P9-201ENST00000558927 1449 ntBASIC19.18■□□□□ 0.66
USP29Q9HBJ7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 AC005521.1-201ENST00000393351 872 ntBASIC19.18■□□□□ 0.66
USP29Q9HBJ7 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 NT5C-211ENST00000582170 653 ntTSL 3 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.18■□□□□ 0.66
USP29Q9HBJ7 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 KRT8P45-201ENST00000414328 1447 ntBASIC19.17■□□□□ 0.66
USP29Q9HBJ7 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 AL137013.1-201ENST00000432946 1228 ntBASIC19.17■□□□□ 0.66
USP29Q9HBJ7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 KRT18P35-201ENST00000510488 1269 ntBASIC19.17■□□□□ 0.66
USP29Q9HBJ7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 AL109659.2-201ENST00000606809 1674 ntBASIC19.17■□□□□ 0.66
USP29Q9HBJ7 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
USP29Q9HBJ7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 ARMC10P1-201ENST00000313754 855 ntBASIC19.16■□□□□ 0.66
USP29Q9HBJ7 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 AP005242.2-201ENST00000580065 1175 ntBASIC19.16■□□□□ 0.66
USP29Q9HBJ7 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 AC010947.1-201ENST00000623454 693 ntBASIC19.16■□□□□ 0.66
USP29Q9HBJ7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USP29Q9HBJ7 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms