Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC23.62■■□□□ 1.37
USP42Q9H9J4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 TEX21P-204ENST00000641479 1693 ntBASIC23.61■■□□□ 1.37
USP42Q9H9J4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 REXO1L6P-202ENST00000619970 1078 ntBASIC23.61■■□□□ 1.37
USP42Q9H9J4 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USP42Q9H9J4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
USP42Q9H9J4 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 IGHGP-201ENST00000390555 1178 ntBASIC23.6■■□□□ 1.37
USP42Q9H9J4 SAPCD2P3-201ENST00000455031 850 ntBASIC23.6■■□□□ 1.37
USP42Q9H9J4 TEN1-204ENST00000588202 862 ntTSL 3 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC23.6■■□□□ 1.37
USP42Q9H9J4 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
USP42Q9H9J4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC23.6■■□□□ 1.37
USP42Q9H9J4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP42Q9H9J4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 RN7SL606P-201ENST00000472779 293 ntBASIC23.59■■□□□ 1.37
USP42Q9H9J4 RNA5SP419-201ENST00000515908 135 ntBASIC23.59■■□□□ 1.37
USP42Q9H9J4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 AP005901.3-202ENST00000581653 237 ntBASIC23.59■■□□□ 1.37
USP42Q9H9J4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP42Q9H9J4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP42Q9H9J4 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP42Q9H9J4 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
USP42Q9H9J4 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
USP42Q9H9J4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USP42Q9H9J4 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC23.59■■□□□ 1.37
USP42Q9H9J4 TP73-AS1-207ENST00000624167 988 ntBASIC23.59■■□□□ 1.37
USP42Q9H9J4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP42Q9H9J4 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
USP42Q9H9J4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP42Q9H9J4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP42Q9H9J4 AC141586.3-201ENST00000562166 1838 ntBASIC23.58■■□□□ 1.37
USP42Q9H9J4 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
USP42Q9H9J4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP42Q9H9J4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
USP42Q9H9J4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.36
USP42Q9H9J4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.58■■□□□ 1.36
USP42Q9H9J4 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
USP42Q9H9J4 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.58■■□□□ 1.36
USP42Q9H9J4 MIR564-202ENST00000385049 94 ntBASIC23.58■■□□□ 1.36
USP42Q9H9J4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.58■■□□□ 1.36
USP42Q9H9J4 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC23.58■■□□□ 1.36
USP42Q9H9J4 PPIE-208ENST00000470213 927 ntTSL 3 BASIC23.58■■□□□ 1.36
USP42Q9H9J4 NME4-212ENST00000621774 904 ntTSL 3 BASIC23.58■■□□□ 1.36
USP42Q9H9J4 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC23.58■■□□□ 1.36
USP42Q9H9J4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 KATNBL1P6-202ENST00000562413 1466 ntBASIC23.57■■□□□ 1.36
USP42Q9H9J4 NSUN5P1-202ENST00000421140 1535 ntBASIC23.57■■□□□ 1.36
USP42Q9H9J4 NSUN5P2-203ENST00000457352 1529 ntBASIC23.57■■□□□ 1.36
USP42Q9H9J4 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC23.57■■□□□ 1.36
USP42Q9H9J4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
USP42Q9H9J4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms