Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLIP3Q96DZ5 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 NEK4P2-201ENST00000580004 1012 ntBASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 MIR4674-201ENST00000582457 87 ntBASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 AC093484.2-201ENST00000580996 2166 ntBASIC17.93■□□□□ 0.46
CLIP3Q96DZ5 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 AC008622.2-201ENST00000617006 1229 ntBASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.92■□□□□ 0.46
CLIP3Q96DZ5 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 AC090340.1-201ENST00000620778 4980 ntBASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 AL031133.1-201ENST00000406807 723 ntBASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 CR769767.2-201ENST00000622735 460 ntBASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 MYC-208ENST00000641036 567 ntBASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CLIP3Q96DZ5 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms