Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 AC073130.3-201ENST00000624389 2278 ntBASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 AP001005.1-201ENST00000571755 1248 ntBASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 AP005901.3-202ENST00000581653 237 ntBASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC16.72■□□□□ 0.27
SNRNP40Q96DI7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 PMS2P1-201ENST00000431037 1228 ntBASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 AC139530.3-201ENST00000620344 690 ntBASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 KRT8P32-201ENST00000512863 1461 ntBASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SNRNP40Q96DI7 IL9RP2-201ENST00000423948 1312 ntBASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 AL353692.3-201ENST00000407031 1396 ntBASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 MIR574-201ENST00000385209 96 ntBASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 MINOS1P3-201ENST00000457048 203 ntBASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 AC091607.1-201ENST00000490318 1060 ntBASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 TP73-AS1-207ENST00000624167 988 ntBASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.7■□□□□ 0.26
SNRNP40Q96DI7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC16.69■□□□□ 0.26
SNRNP40Q96DI7 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms