Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CPNE4Q96A23 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CPNE4Q96A23 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CPNE4Q96A23 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 AC006333.2-201ENST00000607957 2099 ntBASIC16.7■□□□□ 0.26
CPNE4Q96A23 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 AK4P3-201ENST00000418260 669 ntBASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 AC117947.1-201ENST00000427448 529 ntBASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 YBX1P2-201ENST00000489612 999 ntBASIC16.7■□□□□ 0.26
CPNE4Q96A23 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 AC139887.4-201ENST00000607877 719 ntBASIC16.7■□□□□ 0.26
CPNE4Q96A23 AC006011.2-201ENST00000621313 1158 ntBASIC16.7■□□□□ 0.26
CPNE4Q96A23 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.7■□□□□ 0.26
CPNE4Q96A23 HOXB1-202ENST00000577092 1414 ntBASIC16.7■□□□□ 0.26
CPNE4Q96A23 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CPNE4Q96A23 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 RNF152P1-201ENST00000397754 604 ntBASIC16.69■□□□□ 0.26
CPNE4Q96A23 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 LINC01238-205ENST00000567549 1107 ntBASIC16.69■□□□□ 0.26
CPNE4Q96A23 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 AC112497.1-201ENST00000624824 639 ntBASIC16.69■□□□□ 0.26
CPNE4Q96A23 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 MTMR9LP-203ENST00000426597 1545 ntBASIC16.69■□□□□ 0.26
CPNE4Q96A23 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CPNE4Q96A23 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.69■□□□□ 0.26
CPNE4Q96A23 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CPNE4Q96A23 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPNE4Q96A23 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 AL357033.4-201ENST00000617703 1807 ntBASIC16.68■□□□□ 0.26
CPNE4Q96A23 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPNE4Q96A23 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPNE4Q96A23 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPNE4Q96A23 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 KRT18P23-201ENST00000435622 1283 ntBASIC16.68■□□□□ 0.26
CPNE4Q96A23 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.68■□□□□ 0.26
CPNE4Q96A23 AL049597.2-201ENST00000565575 961 ntBASIC16.68■□□□□ 0.26
CPNE4Q96A23 AL023973.1-201ENST00000624619 620 ntBASIC16.68■□□□□ 0.26
CPNE4Q96A23 Z98044.1-201ENST00000632503 1764 ntBASIC16.68■□□□□ 0.26
CPNE4Q96A23 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CPNE4Q96A23 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPNE4Q96A23 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CPNE4Q96A23 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms