Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 FXN-203ENST00000396366 922 ntTSL 2 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 AP000523.1-201ENST00000398242 1049 ntBASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 FAAHP1-202ENST00000446499 1238 ntBASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 AC111152.3-201ENST00000569699 673 ntBASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 AC024243.1-201ENST00000609234 778 ntBASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 BCL10-202ENST00000620248 774 ntTSL 5 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 DFFB-212ENST00000625756 649 ntTSL 5 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 KRT17P6-201ENST00000453795 1220 ntBASIC22■■□□□ 1.11
NKX2-3Q8TAU0 SEC1P-202ENST00000473944 940 ntBASIC22■■□□□ 1.11
NKX2-3Q8TAU0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 PRELID1P1-202ENST00000567272 903 ntBASIC22■■□□□ 1.11
NKX2-3Q8TAU0 MIR3652-201ENST00000579335 131 ntBASIC22■■□□□ 1.11
NKX2-3Q8TAU0 AC023511.2-201ENST00000618803 211 ntBASIC22■■□□□ 1.11
NKX2-3Q8TAU0 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC22■■□□□ 1.11
NKX2-3Q8TAU0 ANO7L1-203ENST00000602586 1720 ntBASIC22■■□□□ 1.11
NKX2-3Q8TAU0 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 SPDYE15P-201ENST00000424157 909 ntBASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 AP000347.1-202ENST00000435868 847 ntBASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 LY6E-213ENST00000522528 606 ntTSL 3 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.99■■□□□ 1.11
NKX2-3Q8TAU0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 AP000593.1-201ENST00000393668 712 ntBASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 AC112907.2-201ENST00000448639 330 ntBASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC21.98■■□□□ 1.11
NKX2-3Q8TAU0 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.98■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms