Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SLC44A3Q8N4M1 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 AF186996.4-201ENST00000467186 377 ntBASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 AC009065.1-201ENST00000564055 1225 ntBASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 KRT89P-201ENST00000620027 1478 ntBASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.03■□□□□ 0.64
SLC44A3Q8N4M1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 AC093909.1-201ENST00000504731 1122 ntBASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 AC092865.5-201ENST00000545435 363 ntBASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 AC106730.1-201ENST00000566722 1090 ntBASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
SLC44A3Q8N4M1 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SLC44A3Q8N4M1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SLC44A3Q8N4M1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SLC44A3Q8N4M1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
SLC44A3Q8N4M1 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 RNPS1P1-201ENST00000507437 918 ntBASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 BNIP3P18-201ENST00000593976 575 ntBASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SLC44A3Q8N4M1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 POLD2P1-201ENST00000511220 997 ntBASIC19■□□□□ 0.63
SLC44A3Q8N4M1 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 FEM1AP3-201ENST00000403722 1741 ntBASIC19■□□□□ 0.63
SLC44A3Q8N4M1 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
SLC44A3Q8N4M1 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.99■□□□□ 0.63
SLC44A3Q8N4M1 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms