Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC21.56■■□□□ 1.04
KRT40Q6A162 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC21.56■■□□□ 1.04
KRT40Q6A162 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
KRT40Q6A162 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC21.56■■□□□ 1.04
KRT40Q6A162 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
KRT40Q6A162 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
KRT40Q6A162 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT40Q6A162 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT40Q6A162 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.55■■□□□ 1.04
KRT40Q6A162 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.55■■□□□ 1.04
KRT40Q6A162 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.55■■□□□ 1.04
KRT40Q6A162 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.55■■□□□ 1.04
KRT40Q6A162 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
KRT40Q6A162 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
KRT40Q6A162 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 KRT8P45-201ENST00000414328 1447 ntBASIC21.55■■□□□ 1.04
KRT40Q6A162 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
KRT40Q6A162 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
KRT40Q6A162 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT40Q6A162 MCCD1P1-208ENST00000445732 328 ntBASIC21.54■■□□□ 1.04
KRT40Q6A162 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.54■■□□□ 1.04
KRT40Q6A162 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
KRT40Q6A162 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.54■■□□□ 1.04
KRT40Q6A162 AC006011.2-201ENST00000621313 1158 ntBASIC21.54■■□□□ 1.04
KRT40Q6A162 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
KRT40Q6A162 AC073592.3-201ENST00000625118 1834 ntBASIC21.54■■□□□ 1.04
KRT40Q6A162 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.54■■□□□ 1.04
KRT40Q6A162 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
KRT40Q6A162 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
KRT40Q6A162 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT40Q6A162 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT40Q6A162 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
KRT40Q6A162 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT40Q6A162 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.53■■□□□ 1.04
KRT40Q6A162 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT40Q6A162 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.53■■□□□ 1.04
KRT40Q6A162 UPK3BP1-201ENST00000428678 509 ntBASIC21.53■■□□□ 1.04
KRT40Q6A162 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.53■■□□□ 1.04
KRT40Q6A162 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
KRT40Q6A162 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
KRT40Q6A162 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.53■■□□□ 1.04
KRT40Q6A162 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
KRT40Q6A162 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT40Q6A162 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT40Q6A162 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT40Q6A162 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.52■■□□□ 1.04
KRT40Q6A162 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
KRT40Q6A162 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
KRT40Q6A162 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.52■■□□□ 1.04
KRT40Q6A162 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.52■■□□□ 1.04
KRT40Q6A162 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
KRT40Q6A162 MIR564-202ENST00000385049 94 ntBASIC21.52■■□□□ 1.04
KRT40Q6A162 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms