Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PCDH1Q08174 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDH1Q08174 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
PCDH1Q08174 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.96■□□□□ 0.47
PCDH1Q08174 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
PCDH1Q08174 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
PCDH1Q08174 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
PCDH1Q08174 SNORA78-201ENST00000459373 127 ntBASIC17.96■□□□□ 0.47
PCDH1Q08174 AL355075.4-201ENST00000554988 638 ntBASIC17.96■□□□□ 0.47
PCDH1Q08174 WWOX-216ENST00000569818 525 ntBASIC17.96■□□□□ 0.47
PCDH1Q08174 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.96■□□□□ 0.47
PCDH1Q08174 MIR3180-5-201ENST00000583743 153 ntBASIC17.96■□□□□ 0.47
PCDH1Q08174 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDH1Q08174 AC034236.2-201ENST00000606662 1610 ntBASIC17.96■□□□□ 0.47
PCDH1Q08174 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 AC135050.7-201ENST00000624508 2218 ntBASIC17.96■□□□□ 0.47
PCDH1Q08174 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.96■□□□□ 0.47
PCDH1Q08174 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
PCDH1Q08174 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDH1Q08174 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDH1Q08174 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
PCDH1Q08174 AC126763.1-201ENST00000552015 2118 ntBASIC17.95■□□□□ 0.46
PCDH1Q08174 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDH1Q08174 TSPY14P-201ENST00000303979 915 ntBASIC17.95■□□□□ 0.46
PCDH1Q08174 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.95■□□□□ 0.46
PCDH1Q08174 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.95■□□□□ 0.46
PCDH1Q08174 AC093827.2-201ENST00000512654 315 ntBASIC17.95■□□□□ 0.46
PCDH1Q08174 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.95■□□□□ 0.46
PCDH1Q08174 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 AP000525.1-201ENST00000608286 694 ntBASIC17.95■□□□□ 0.46
PCDH1Q08174 AC010653.2-201ENST00000623505 997 ntBASIC17.95■□□□□ 0.46
PCDH1Q08174 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 KRT8P7-201ENST00000533003 1432 ntBASIC17.95■□□□□ 0.46
PCDH1Q08174 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 MYLKP1-201ENST00000509077 1580 ntBASIC17.95■□□□□ 0.46
PCDH1Q08174 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PCDH1Q08174 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDH1Q08174 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
PCDH1Q08174 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDH1Q08174 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDH1Q08174 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 CCR12P-201ENST00000446203 998 ntBASIC17.94■□□□□ 0.46
PCDH1Q08174 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDH1Q08174 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PCDH1Q08174 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.94■□□□□ 0.46
PCDH1Q08174 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PCDH1Q08174 HOXB1-202ENST00000577092 1414 ntBASIC17.94■□□□□ 0.46
PCDH1Q08174 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
PCDH1Q08174 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.94■□□□□ 0.46
PCDH1Q08174 AC026471.1-201ENST00000564629 3026 ntBASIC17.94■□□□□ 0.46
PCDH1Q08174 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PCDH1Q08174 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PCDH1Q08174 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PCDH1Q08174 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
PCDH1Q08174 ADK-206ENST00000541550 2222 ntTSL 2 BASIC17.93■□□□□ 0.46
PCDH1Q08174 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PCDH1Q08174 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.93■□□□□ 0.46
PCDH1Q08174 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.93■□□□□ 0.46
PCDH1Q08174 AP003041.3-201ENST00000527151 707 ntBASIC17.93■□□□□ 0.46
PCDH1Q08174 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms