Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGCS2P54868 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 AKR1C7P-201ENST00000305623 895 ntBASIC21.48■■□□□ 1.03
HMGCS2P54868 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 FICD-205ENST00000552758 603 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
HMGCS2P54868 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGCS2P54868 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGCS2P54868 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
HMGCS2P54868 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGCS2P54868 AL357033.4-201ENST00000617703 1807 ntBASIC21.48■■□□□ 1.03
HMGCS2P54868 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
HMGCS2P54868 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC21.47■■□□□ 1.03
HMGCS2P54868 KRT8P50-201ENST00000562022 1438 ntBASIC21.47■■□□□ 1.03
HMGCS2P54868 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
HMGCS2P54868 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
HMGCS2P54868 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.47■■□□□ 1.03
HMGCS2P54868 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.47■■□□□ 1.03
HMGCS2P54868 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGCS2P54868 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.47■■□□□ 1.03
HMGCS2P54868 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGCS2P54868 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGCS2P54868 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGCS2P54868 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.46■■□□□ 1.03
HMGCS2P54868 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.46■■□□□ 1.03
HMGCS2P54868 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
HMGCS2P54868 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 NUS1P2-201ENST00000417358 873 ntBASIC21.46■■□□□ 1.03
HMGCS2P54868 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.46■■□□□ 1.03
HMGCS2P54868 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
HMGCS2P54868 AC009065.1-201ENST00000564055 1225 ntBASIC21.46■■□□□ 1.03
HMGCS2P54868 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGCS2P54868 AIRN-201ENST00000601203 4374 ntBASIC21.46■■□□□ 1.03
HMGCS2P54868 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.45■■□□□ 1.02
HMGCS2P54868 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.45■■□□□ 1.02
HMGCS2P54868 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
HMGCS2P54868 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC21.45■■□□□ 1.02
HMGCS2P54868 VENTXP7-201ENST00000475503 772 ntBASIC21.45■■□□□ 1.02
HMGCS2P54868 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
HMGCS2P54868 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.45■■□□□ 1.02
HMGCS2P54868 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.45■■□□□ 1.02
HMGCS2P54868 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC21.45■■□□□ 1.02
HMGCS2P54868 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.45■■□□□ 1.02
HMGCS2P54868 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
HMGCS2P54868 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 KRT89P-201ENST00000620027 1478 ntBASIC21.45■■□□□ 1.02
HMGCS2P54868 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
HMGCS2P54868 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
HMGCS2P54868 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.45■■□□□ 1.02
HMGCS2P54868 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGCS2P54868 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.44■■□□□ 1.02
HMGCS2P54868 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGCS2P54868 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.44■■□□□ 1.02
HMGCS2P54868 HEIH-201ENST00000623091 1652 ntBASIC21.44■■□□□ 1.02
HMGCS2P54868 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
HMGCS2P54868 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGCS2P54868 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGCS2P54868 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC21.44■■□□□ 1.02
HMGCS2P54868 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGCS2P54868 AL662844.1-201ENST00000546340 181 ntBASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms