Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.7■□□□□ 0.58
PTPN4P29074 FAM197Y1-201ENST00000421178 764 ntBASIC18.7■□□□□ 0.58
PTPN4P29074 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
PTPN4P29074 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
PTPN4P29074 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.7■□□□□ 0.58
PTPN4P29074 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
PTPN4P29074 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN4P29074 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.7■□□□□ 0.58
PTPN4P29074 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PTPN4P29074 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTPN4P29074 AC008764.6-201ENST00000595909 2069 ntBASIC18.7■□□□□ 0.58
PTPN4P29074 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.7■□□□□ 0.58
PTPN4P29074 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.7■□□□□ 0.58
PTPN4P29074 IRX1P1-201ENST00000438849 1838 ntBASIC18.7■□□□□ 0.58
PTPN4P29074 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.69■□□□□ 0.58
PTPN4P29074 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
PTPN4P29074 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN4P29074 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN4P29074 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.69■□□□□ 0.58
PTPN4P29074 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 MIR1224-201ENST00000408193 85 ntBASIC18.69■□□□□ 0.58
PTPN4P29074 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN4P29074 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.69■□□□□ 0.58
PTPN4P29074 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN4P29074 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PTPN4P29074 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
PTPN4P29074 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.69■□□□□ 0.58
PTPN4P29074 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTPN4P29074 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PTPN4P29074 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC18.68■□□□□ 0.58
PTPN4P29074 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PTPN4P29074 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN4P29074 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PTPN4P29074 AP002982.1-201ENST00000492365 877 ntBASIC18.68■□□□□ 0.58
PTPN4P29074 KRT18P21-201ENST00000515767 1272 ntBASIC18.68■□□□□ 0.58
PTPN4P29074 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
PTPN4P29074 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.68■□□□□ 0.58
PTPN4P29074 AC097493.4-201ENST00000641197 219 ntBASIC18.68■□□□□ 0.58
PTPN4P29074 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PTPN4P29074 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PTPN4P29074 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN4P29074 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.68■□□□□ 0.58
PTPN4P29074 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTPN4P29074 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.68■□□□□ 0.58
PTPN4P29074 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PTPN4P29074 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN4P29074 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN4P29074 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.67■□□□□ 0.58
PTPN4P29074 AL353708.3-201ENST00000610272 989 ntBASIC18.67■□□□□ 0.58
PTPN4P29074 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.67■□□□□ 0.58
PTPN4P29074 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTPN4P29074 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
PTPN4P29074 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.67■□□□□ 0.58
PTPN4P29074 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
PTPN4P29074 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 ANO7L1-203ENST00000602586 1720 ntBASIC18.66■□□□□ 0.58
PTPN4P29074 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PTPN4P29074 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN4P29074 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
PTPN4P29074 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTPN4P29074 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.66■□□□□ 0.58
PTPN4P29074 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms