Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 AC004980.1-204ENST00000429707 299 ntBASIC14.2□□□□□ -0.14
HLA-DMBP28068 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 AC133681.1-201ENST00000465482 601 ntBASIC14.2□□□□□ -0.14
HLA-DMBP28068 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 TK2-204ENST00000525974 1178 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 NOC2LP1-202ENST00000452600 2235 ntBASIC14.19□□□□□ -0.14
HLA-DMBP28068 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 FZD10-202ENST00000539839 3282 ntBASIC14.19□□□□□ -0.14
HLA-DMBP28068 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 AL445675.2-201ENST00000620291 557 ntBASIC14.19□□□□□ -0.14
HLA-DMBP28068 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 AC131212.4-201ENST00000623606 975 ntBASIC14.19□□□□□ -0.14
HLA-DMBP28068 AC068587.9-201ENST00000641814 219 ntBASIC14.19□□□□□ -0.14
HLA-DMBP28068 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HLA-DMBP28068 CD276-203ENST00000537340 2439 ntTSL 2 BASIC14.19□□□□□ -0.14
HLA-DMBP28068 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 HTR7P1-201ENST00000538670 1336 ntBASIC14.18□□□□□ -0.14
HLA-DMBP28068 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HLA-DMBP28068 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms