Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGA1P17096 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGA1P17096 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
HMGA1P17096 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HMGA1P17096 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGA1P17096 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGA1P17096 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGA1P17096 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGA1P17096 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGA1P17096 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HMGA1P17096 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGA1P17096 GPR32P1-201ENST00000601788 811 ntBASIC19.29■□□□□ 0.68
HMGA1P17096 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.29■□□□□ 0.68
HMGA1P17096 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.29■□□□□ 0.68
HMGA1P17096 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.29■□□□□ 0.68
HMGA1P17096 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGA1P17096 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGA1P17096 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HMGA1P17096 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGA1P17096 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
HMGA1P17096 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HMGA1P17096 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.28■□□□□ 0.68
HMGA1P17096 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HMGA1P17096 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.28■□□□□ 0.68
HMGA1P17096 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HMGA1P17096 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HMGA1P17096 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HMGA1P17096 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
HMGA1P17096 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGA1P17096 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.27■□□□□ 0.68
HMGA1P17096 CIB2-208ENST00000560618 804 ntTSL 2 BASIC19.27■□□□□ 0.68
HMGA1P17096 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC19.27■□□□□ 0.68
HMGA1P17096 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HMGA1P17096 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.27■□□□□ 0.67
HMGA1P17096 KRT89P-201ENST00000620027 1478 ntBASIC19.27■□□□□ 0.67
HMGA1P17096 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGA1P17096 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGA1P17096 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
HMGA1P17096 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGA1P17096 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGA1P17096 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGA1P17096 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.26■□□□□ 0.67
HMGA1P17096 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGA1P17096 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.26■□□□□ 0.67
HMGA1P17096 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGA1P17096 AC090616.6-201ENST00000582640 721 ntBASIC19.26■□□□□ 0.67
HMGA1P17096 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGA1P17096 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.26■□□□□ 0.67
HMGA1P17096 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGA1P17096 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGA1P17096 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms