Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 NUS1P2-201ENST00000417358 873 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 KRT16P4-201ENST00000453883 522 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 VENTXP7-201ENST00000475503 772 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 AC120114.3-201ENST00000611923 658 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL11A1P12107 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.13■□□□□ 0.97
COL11A1P12107 FAAHP1-202ENST00000446499 1238 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC21.13■□□□□ 0.97
COL11A1P12107 GUSBP12-201ENST00000513727 720 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.13■□□□□ 0.97
COL11A1P12107 BNIP3P18-201ENST00000593976 575 ntBASIC21.13■□□□□ 0.97
COL11A1P12107 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL11A1P12107 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.12■□□□□ 0.97
COL11A1P12107 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.12■□□□□ 0.97
COL11A1P12107 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.12■□□□□ 0.97
COL11A1P12107 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.12■□□□□ 0.97
COL11A1P12107 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL11A1P12107 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
COL11A1P12107 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
COL11A1P12107 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC21.11■□□□□ 0.97
COL11A1P12107 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.11■□□□□ 0.97
COL11A1P12107 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.11■□□□□ 0.97
COL11A1P12107 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
COL11A1P12107 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.11■□□□□ 0.97
COL11A1P12107 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.11■□□□□ 0.97
COL11A1P12107 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 AP002469.2-201ENST00000531724 424 ntBASIC21.11■□□□□ 0.97
COL11A1P12107 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.11■□□□□ 0.97
COL11A1P12107 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 AL160237.2-201ENST00000556165 472 ntBASIC21.11■□□□□ 0.97
COL11A1P12107 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC21.11■□□□□ 0.97
COL11A1P12107 AC005332.3-201ENST00000589904 676 ntBASIC21.11■□□□□ 0.97
COL11A1P12107 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL11A1P12107 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 REXO1L6P-202ENST00000619970 1078 ntBASIC21.11■□□□□ 0.97
COL11A1P12107 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL11A1P12107 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL11A1P12107 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL11A1P12107 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL11A1P12107 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.1■□□□□ 0.97
COL11A1P12107 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.1■□□□□ 0.97
COL11A1P12107 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
COL11A1P12107 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL11A1P12107 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.1■□□□□ 0.97
COL11A1P12107 AP000347.1-202ENST00000435868 847 ntBASIC21.1■□□□□ 0.97
COL11A1P12107 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.1■□□□□ 0.97
COL11A1P12107 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.1■□□□□ 0.97
COL11A1P12107 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL11A1P12107 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL11A1P12107 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL11A1P12107 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.09■□□□□ 0.97
COL11A1P12107 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC21.09■□□□□ 0.97
COL11A1P12107 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL11A1P12107 MIR149-201ENST00000384879 89 ntBASIC21.09■□□□□ 0.97
COL11A1P12107 SAPCD2P3-201ENST00000455031 850 ntBASIC21.09■□□□□ 0.97
COL11A1P12107 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.09■□□□□ 0.97
COL11A1P12107 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.09■□□□□ 0.97
COL11A1P12107 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.09■□□□□ 0.97
COL11A1P12107 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL11A1P12107 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC21.09■□□□□ 0.97
COL11A1P12107 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.09■□□□□ 0.97
COL11A1P12107 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.09■□□□□ 0.97
COL11A1P12107 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.09■□□□□ 0.97
COL11A1P12107 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL11A1P12107 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL11A1P12107 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC21.09■□□□□ 0.97
COL11A1P12107 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
COL11A1P12107 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL11A1P12107 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms