Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.14■□□□□ 0.49
HOXC4P09017 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HOXC4P09017 IGHGP-201ENST00000390555 1178 ntBASIC18.14■□□□□ 0.49
HOXC4P09017 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 HCG4P8-203ENST00000443049 980 ntBASIC18.14■□□□□ 0.49
HOXC4P09017 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.14■□□□□ 0.49
HOXC4P09017 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
HOXC4P09017 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.14■□□□□ 0.49
HOXC4P09017 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.14■□□□□ 0.49
HOXC4P09017 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.14■□□□□ 0.49
HOXC4P09017 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
HOXC4P09017 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HOXC4P09017 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HOXC4P09017 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.13■□□□□ 0.49
HOXC4P09017 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 MIR3180-1-201ENST00000580374 94 ntBASIC18.13■□□□□ 0.49
HOXC4P09017 MIR3180-3-201ENST00000584616 94 ntBASIC18.13■□□□□ 0.49
HOXC4P09017 GPR32P1-201ENST00000601788 811 ntBASIC18.13■□□□□ 0.49
HOXC4P09017 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 AC009102.3-201ENST00000623118 1491 ntBASIC18.13■□□□□ 0.49
HOXC4P09017 ASL-204ENST00000395331 1538 ntTSL 5 BASIC18.13■□□□□ 0.49
HOXC4P09017 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HOXC4P09017 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.13■□□□□ 0.49
HOXC4P09017 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC4P09017 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
HOXC4P09017 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 AP002383.4-201ENST00000442518 975 ntBASIC18.12■□□□□ 0.49
HOXC4P09017 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC4P09017 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.12■□□□□ 0.49
HOXC4P09017 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC4P09017 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 AC090616.6-201ENST00000582640 721 ntBASIC18.12■□□□□ 0.49
HOXC4P09017 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.12■□□□□ 0.49
HOXC4P09017 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC4P09017 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.12■□□□□ 0.49
HOXC4P09017 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC4P09017 Z83836.1-201ENST00000624605 1642 ntBASIC18.12■□□□□ 0.49
HOXC4P09017 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
HOXC4P09017 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.12■□□□□ 0.49
HOXC4P09017 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
HOXC4P09017 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC4P09017 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.11■□□□□ 0.49
HOXC4P09017 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC4P09017 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC4P09017 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC4P09017 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC4P09017 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.11■□□□□ 0.49
HOXC4P09017 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
HOXC4P09017 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC4P09017 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HOXC4P09017 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
HOXC4P09017 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.11■□□□□ 0.49
HOXC4P09017 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC4P09017 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.11■□□□□ 0.49
HOXC4P09017 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.11■□□□□ 0.49
HOXC4P09017 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.11■□□□□ 0.49
HOXC4P09017 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.11■□□□□ 0.49
HOXC4P09017 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.11■□□□□ 0.49
HOXC4P09017 AC092329.2-201ENST00000598402 547 ntBASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms