Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC24.55■■□□□ 1.52
COL3A1P02461 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
COL3A1P02461 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
COL3A1P02461 AC018445.3-201ENST00000624177 1945 ntBASIC24.55■■□□□ 1.52
COL3A1P02461 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
COL3A1P02461 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC24.55■■□□□ 1.52
COL3A1P02461 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
COL3A1P02461 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC24.55■■□□□ 1.52
COL3A1P02461 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC24.55■■□□□ 1.52
COL3A1P02461 TNXA-203ENST00000507684 2038 ntBASIC24.55■■□□□ 1.52
COL3A1P02461 AC098818.2-201ENST00000564925 2320 ntBASIC24.55■■□□□ 1.52
COL3A1P02461 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
COL3A1P02461 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
COL3A1P02461 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
COL3A1P02461 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL3A1P02461 IGHGP-201ENST00000390555 1178 ntBASIC24.54■■□□□ 1.52
COL3A1P02461 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
COL3A1P02461 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC24.54■■□□□ 1.52
COL3A1P02461 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC24.54■■□□□ 1.52
COL3A1P02461 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC24.54■■□□□ 1.52
COL3A1P02461 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL3A1P02461 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC24.54■■□□□ 1.52
COL3A1P02461 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC24.54■■□□□ 1.52
COL3A1P02461 GPR32P1-201ENST00000601788 811 ntBASIC24.54■■□□□ 1.52
COL3A1P02461 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC24.54■■□□□ 1.52
COL3A1P02461 AC093458.2-201ENST00000623150 629 ntBASIC24.54■■□□□ 1.52
COL3A1P02461 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC24.54■■□□□ 1.52
COL3A1P02461 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC24.54■■□□□ 1.52
COL3A1P02461 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC24.54■■□□□ 1.52
COL3A1P02461 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL3A1P02461 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
COL3A1P02461 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.54■■□□□ 1.52
COL3A1P02461 AC016734.2-201ENST00000624325 1377 ntBASIC24.54■■□□□ 1.52
COL3A1P02461 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 ADK-206ENST00000541550 2222 ntTSL 2 BASIC24.53■■□□□ 1.52
COL3A1P02461 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
COL3A1P02461 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC24.53■■□□□ 1.52
COL3A1P02461 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC24.53■■□□□ 1.52
COL3A1P02461 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC24.53■■□□□ 1.52
COL3A1P02461 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC24.53■■□□□ 1.52
COL3A1P02461 AC099343.3-201ENST00000605834 2503 ntBASIC24.53■■□□□ 1.52
COL3A1P02461 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
COL3A1P02461 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC24.52■■□□□ 1.52
COL3A1P02461 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL3A1P02461 HES2-202ENST00000377836 507 ntTSL 2 BASIC24.52■■□□□ 1.52
COL3A1P02461 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL3A1P02461 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC24.52■■□□□ 1.52
COL3A1P02461 AC011498.5-201ENST00000592027 486 ntBASIC24.52■■□□□ 1.52
COL3A1P02461 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
COL3A1P02461 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL3A1P02461 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC24.52■■□□□ 1.52
COL3A1P02461 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
COL3A1P02461 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC24.52■■□□□ 1.52
COL3A1P02461 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC24.52■■□□□ 1.52
COL3A1P02461 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
COL3A1P02461 AC126763.1-201ENST00000552015 2118 ntBASIC24.52■■□□□ 1.52
COL3A1P02461 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
COL3A1P02461 AC093503.3-201ENST00000624917 2352 ntBASIC24.52■■□□□ 1.52
COL3A1P02461 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
COL3A1P02461 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
COL3A1P02461 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC24.51■■□□□ 1.51
COL3A1P02461 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.51■■□□□ 1.51
COL3A1P02461 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
COL3A1P02461 Z83836.1-201ENST00000624605 1642 ntBASIC24.51■■□□□ 1.51
COL3A1P02461 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC24.51■■□□□ 1.51
COL3A1P02461 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC24.51■■□□□ 1.51
COL3A1P02461 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC24.51■■□□□ 1.51
COL3A1P02461 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC24.51■■□□□ 1.51
COL3A1P02461 AC024563.2-201ENST00000603282 481 ntBASIC24.51■■□□□ 1.51
COL3A1P02461 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
COL3A1P02461 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
COL3A1P02461 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
COL3A1P02461 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC24.5■■□□□ 1.51
COL3A1P02461 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 BAALC-202ENST00000306391 243 ntTSL 5 BASIC24.5■■□□□ 1.51
COL3A1P02461 BAALC-204ENST00000330955 222 ntTSL 5 BASIC24.5■■□□□ 1.51
COL3A1P02461 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
COL3A1P02461 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms