Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC016734.2-201ENST00000624325 1377 ntBASIC18.17■□□□□ 0.5
TNFP01375 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TNFP01375 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TNFP01375 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 AP000593.1-201ENST00000393668 712 ntBASIC18.16■□□□□ 0.5
TNFP01375 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.16■□□□□ 0.5
TNFP01375 TOLLIP-AS1-201ENST00000530897 939 ntBASIC18.16■□□□□ 0.5
TNFP01375 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC18.16■□□□□ 0.5
TNFP01375 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.16■□□□□ 0.5
TNFP01375 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.16■□□□□ 0.5
TNFP01375 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.16■□□□□ 0.5
TNFP01375 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.16■□□□□ 0.5
TNFP01375 AC083906.6-201ENST00000641366 219 ntBASIC18.16■□□□□ 0.5
TNFP01375 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 MTMR9LP-203ENST00000426597 1545 ntBASIC18.16■□□□□ 0.5
TNFP01375 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
TNFP01375 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TNFP01375 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.16■□□□□ 0.5
TNFP01375 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.16■□□□□ 0.5
TNFP01375 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TNFP01375 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TNFP01375 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TNFP01375 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.15■□□□□ 0.5
TNFP01375 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TNFP01375 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TNFP01375 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.15■□□□□ 0.5
TNFP01375 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.15■□□□□ 0.5
TNFP01375 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TNFP01375 TSPY22P-201ENST00000427496 604 ntBASIC18.15■□□□□ 0.5
TNFP01375 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.15■□□□□ 0.5
TNFP01375 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.15■□□□□ 0.5
TNFP01375 AP003733.1-201ENST00000491725 852 ntBASIC18.15■□□□□ 0.5
TNFP01375 AC092329.2-201ENST00000598402 547 ntBASIC18.15■□□□□ 0.5
TNFP01375 AC092119.3-201ENST00000612618 583 ntBASIC18.15■□□□□ 0.5
TNFP01375 NPAP1P7-201ENST00000613027 823 ntBASIC18.15■□□□□ 0.5
TNFP01375 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
TNFP01375 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TNFP01375 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.15■□□□□ 0.5
TNFP01375 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TNFP01375 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TNFP01375 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TNFP01375 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
TNFP01375 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
TNFP01375 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.14■□□□□ 0.5
TNFP01375 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.14■□□□□ 0.49
TNFP01375 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFP01375 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.14■□□□□ 0.49
TNFP01375 KRT18P41-201ENST00000518924 1277 ntBASIC18.14■□□□□ 0.49
TNFP01375 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.14■□□□□ 0.49
TNFP01375 KRT126P-201ENST00000549467 1181 ntBASIC18.14■□□□□ 0.49
TNFP01375 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC18.14■□□□□ 0.49
TNFP01375 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TNFP01375 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFP01375 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.14■□□□□ 0.49
TNFP01375 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TNFP01375 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.14■□□□□ 0.49
TNFP01375 KRT8P50-201ENST00000562022 1438 ntBASIC18.14■□□□□ 0.49
TNFP01375 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFP01375 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFP01375 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms