Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX3O95343 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX3O95343 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 AC098590.1-201ENST00000468126 897 ntBASIC18.22■□□□□ 0.51
SIX3O95343 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.22■□□□□ 0.51
SIX3O95343 AP000692.2-201ENST00000608391 879 ntBASIC18.22■□□□□ 0.51
SIX3O95343 AC008622.2-201ENST00000617006 1229 ntBASIC18.22■□□□□ 0.51
SIX3O95343 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX3O95343 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.22■□□□□ 0.51
SIX3O95343 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SIX3O95343 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
SIX3O95343 KRT8P45-201ENST00000414328 1447 ntBASIC18.22■□□□□ 0.51
SIX3O95343 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SIX3O95343 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.22■□□□□ 0.51
SIX3O95343 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SIX3O95343 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX3O95343 AC135776.1-201ENST00000319817 2481 ntBASIC18.21■□□□□ 0.51
SIX3O95343 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX3O95343 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.21■□□□□ 0.51
SIX3O95343 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.21■□□□□ 0.51
SIX3O95343 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
SIX3O95343 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.21■□□□□ 0.51
SIX3O95343 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX3O95343 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.21■□□□□ 0.51
SIX3O95343 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.21■□□□□ 0.51
SIX3O95343 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SIX3O95343 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.5
SIX3O95343 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SIX3O95343 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SIX3O95343 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.2■□□□□ 0.5
SIX3O95343 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.2■□□□□ 0.5
SIX3O95343 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 AC142381.4-202ENST00000563973 229 ntBASIC18.2■□□□□ 0.5
SIX3O95343 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.2■□□□□ 0.5
SIX3O95343 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.2■□□□□ 0.5
SIX3O95343 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SIX3O95343 AC112777.1-201ENST00000540175 1423 ntBASIC18.2■□□□□ 0.5
SIX3O95343 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 AC068880.1-201ENST00000507289 2297 ntBASIC18.2■□□□□ 0.5
SIX3O95343 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SIX3O95343 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
SIX3O95343 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SIX3O95343 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX3O95343 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SIX3O95343 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX3O95343 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.19■□□□□ 0.5
SIX3O95343 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.19■□□□□ 0.5
SIX3O95343 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.19■□□□□ 0.5
SIX3O95343 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.19■□□□□ 0.5
SIX3O95343 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.19■□□□□ 0.5
SIX3O95343 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.19■□□□□ 0.5
SIX3O95343 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.19■□□□□ 0.5
SIX3O95343 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.19■□□□□ 0.5
SIX3O95343 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SIX3O95343 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
SIX3O95343 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SIX3O95343 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms