Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.61■□□□□ 0.57
LDB2O43679 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.61■□□□□ 0.57
LDB2O43679 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.61■□□□□ 0.57
LDB2O43679 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDB2O43679 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDB2O43679 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDB2O43679 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
LDB2O43679 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.61■□□□□ 0.57
LDB2O43679 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
LDB2O43679 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
LDB2O43679 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.6■□□□□ 0.57
LDB2O43679 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LDB2O43679 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
LDB2O43679 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB2O43679 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.6■□□□□ 0.57
LDB2O43679 HOXB1-202ENST00000577092 1414 ntBASIC18.6■□□□□ 0.57
LDB2O43679 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.6■□□□□ 0.57
LDB2O43679 LINC01568-207ENST00000641790 1380 ntBASIC18.6■□□□□ 0.57
LDB2O43679 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB2O43679 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 AP000593.1-201ENST00000393668 712 ntBASIC18.6■□□□□ 0.57
LDB2O43679 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
LDB2O43679 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.6■□□□□ 0.57
LDB2O43679 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.6■□□□□ 0.57
LDB2O43679 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.6■□□□□ 0.57
LDB2O43679 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
LDB2O43679 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.6■□□□□ 0.57
LDB2O43679 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB2O43679 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.6■□□□□ 0.57
LDB2O43679 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB2O43679 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
LDB2O43679 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.6■□□□□ 0.57
LDB2O43679 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.59■□□□□ 0.57
LDB2O43679 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
LDB2O43679 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LDB2O43679 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.59■□□□□ 0.57
LDB2O43679 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.59■□□□□ 0.57
LDB2O43679 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
LDB2O43679 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.59■□□□□ 0.57
LDB2O43679 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
LDB2O43679 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LDB2O43679 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
LDB2O43679 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.59■□□□□ 0.57
LDB2O43679 BICD1-207ENST00000551848 1962 ntBASIC18.59■□□□□ 0.57
LDB2O43679 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
LDB2O43679 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LDB2O43679 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.58■□□□□ 0.57
LDB2O43679 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LDB2O43679 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
LDB2O43679 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LDB2O43679 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.58■□□□□ 0.57
LDB2O43679 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LDB2O43679 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LDB2O43679 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
LDB2O43679 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LDB2O43679 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
LDB2O43679 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.58■□□□□ 0.57
LDB2O43679 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LDB2O43679 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.58■□□□□ 0.56
LDB2O43679 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.58■□□□□ 0.56
LDB2O43679 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.58■□□□□ 0.56
LDB2O43679 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.58■□□□□ 0.56
LDB2O43679 AC145285.6-201ENST00000604632 637 ntBASIC18.58■□□□□ 0.56
LDB2O43679 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LDB2O43679 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.58■□□□□ 0.56
LDB2O43679 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.58■□□□□ 0.56
LDB2O43679 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LDB2O43679 AC135050.7-201ENST00000624508 2218 ntBASIC18.58■□□□□ 0.56
LDB2O43679 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LDB2O43679 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms