Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 MIR6821-201ENST00000617625 74 ntBASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 AC006557.6-201ENST00000623071 864 ntBASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USH1CQ9Y6N9 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 AC135776.1-201ENST00000319817 2481 ntBASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USH1CQ9Y6N9 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 PCDHA12-202ENST00000613593 2588 ntBASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
USH1CQ9Y6N9 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 AC133552.2-202ENST00000575694 574 ntBASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 FER1L4-210ENST00000615531 5998 ntBASIC18.54■□□□□ 0.56
USH1CQ9Y6N9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms