Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP29Q9HBJ7 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.22■□□□□ 0.67
USP29Q9HBJ7 AC008622.2-201ENST00000617006 1229 ntBASIC19.22■□□□□ 0.67
USP29Q9HBJ7 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP29Q9HBJ7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 AL049597.2-201ENST00000565575 961 ntBASIC19.21■□□□□ 0.67
USP29Q9HBJ7 AL445228.2-201ENST00000605589 952 ntBASIC19.21■□□□□ 0.67
USP29Q9HBJ7 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP29Q9HBJ7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 RCC2P3-201ENST00000418112 1537 ntBASIC19.2■□□□□ 0.66
USP29Q9HBJ7 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 AC096733.2-201ENST00000609937 1394 ntBASIC19.2■□□□□ 0.66
USP29Q9HBJ7 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.2■□□□□ 0.66
USP29Q9HBJ7 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
USP29Q9HBJ7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.19■□□□□ 0.66
USP29Q9HBJ7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms