Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 MTMR9LP-203ENST00000426597 1545 ntBASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRIM56Q9BRZ2 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 RPPH1-201ENST00000516869 333 ntBASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.03■□□□□ 0.64
TRIM56Q9BRZ2 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 HEIH-201ENST00000623091 1652 ntBASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 AC098590.1-201ENST00000468126 897 ntBASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.64
TRIM56Q9BRZ2 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
TRIM56Q9BRZ2 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.02■□□□□ 0.63
TRIM56Q9BRZ2 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.02■□□□□ 0.63
TRIM56Q9BRZ2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PPP1R14BP5-201ENST00000440334 435 ntBASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 AP002982.1-201ENST00000492365 877 ntBASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 AL354751.1-201ENST00000412768 1863 ntBASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM56Q9BRZ2 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms