Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.25■□□□□ 0.19
COL12A1Q99715 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.25■□□□□ 0.19
COL12A1Q99715 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.25■□□□□ 0.19
COL12A1Q99715 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 SNHG9-202ENST00000564014 471 ntBASIC16.25■□□□□ 0.19
COL12A1Q99715 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.25■□□□□ 0.19
COL12A1Q99715 AC010240.3-201ENST00000607688 395 ntBASIC16.25■□□□□ 0.19
COL12A1Q99715 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.25■□□□□ 0.19
COL12A1Q99715 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 HOXB1-202ENST00000577092 1414 ntBASIC16.25■□□□□ 0.19
COL12A1Q99715 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.25■□□□□ 0.19
COL12A1Q99715 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 AC008556.1-201ENST00000610908 2040 ntBASIC16.25■□□□□ 0.19
COL12A1Q99715 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.25■□□□□ 0.19
COL12A1Q99715 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
COL12A1Q99715 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 UNC93B6-202ENST00000528242 690 ntBASIC16.25■□□□□ 0.19
COL12A1Q99715 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.25■□□□□ 0.19
COL12A1Q99715 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
COL12A1Q99715 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC16.25■□□□□ 0.19
COL12A1Q99715 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
COL12A1Q99715 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
COL12A1Q99715 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
COL12A1Q99715 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
COL12A1Q99715 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.25■□□□□ 0.19
COL12A1Q99715 GPR32P1-201ENST00000601788 811 ntBASIC16.25■□□□□ 0.19
COL12A1Q99715 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.24■□□□□ 0.19
COL12A1Q99715 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.24■□□□□ 0.19
COL12A1Q99715 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.24■□□□□ 0.19
COL12A1Q99715 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
COL12A1Q99715 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL12A1Q99715 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL12A1Q99715 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.24■□□□□ 0.19
COL12A1Q99715 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.24■□□□□ 0.19
COL12A1Q99715 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
COL12A1Q99715 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.24■□□□□ 0.19
COL12A1Q99715 AC092720.2-201ENST00000602388 1665 ntBASIC16.24■□□□□ 0.19
COL12A1Q99715 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
COL12A1Q99715 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC16.24■□□□□ 0.19
COL12A1Q99715 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 ALG1L5P-201ENST00000482043 771 ntBASIC16.24■□□□□ 0.19
COL12A1Q99715 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.24■□□□□ 0.19
COL12A1Q99715 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.24■□□□□ 0.19
COL12A1Q99715 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.24■□□□□ 0.19
COL12A1Q99715 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.24■□□□□ 0.19
COL12A1Q99715 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.24■□□□□ 0.19
COL12A1Q99715 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL12A1Q99715 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
COL12A1Q99715 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC16.24■□□□□ 0.19
COL12A1Q99715 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC16.23■□□□□ 0.19
COL12A1Q99715 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
COL12A1Q99715 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.23■□□□□ 0.19
COL12A1Q99715 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL12A1Q99715 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.23■□□□□ 0.19
COL12A1Q99715 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.23■□□□□ 0.19
COL12A1Q99715 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 PAWRP1-201ENST00000451083 565 ntBASIC16.23■□□□□ 0.19
COL12A1Q99715 GUSBP12-201ENST00000513727 720 ntBASIC16.23■□□□□ 0.19
COL12A1Q99715 AC025062.2-201ENST00000605477 670 ntBASIC16.23■□□□□ 0.19
COL12A1Q99715 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL12A1Q99715 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL12A1Q99715 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
COL12A1Q99715 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms