Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 CRYGFP-201ENST00000418459 633 ntBASIC17.86■□□□□ 0.45
VMP1Q96GC9 AL390955.1-201ENST00000428694 934 ntBASIC17.86■□□□□ 0.45
VMP1Q96GC9 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VMP1Q96GC9 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.86■□□□□ 0.45
VMP1Q96GC9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VMP1Q96GC9 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VMP1Q96GC9 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
VMP1Q96GC9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.85■□□□□ 0.45
VMP1Q96GC9 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VMP1Q96GC9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VMP1Q96GC9 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VMP1Q96GC9 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.85■□□□□ 0.45
VMP1Q96GC9 NOC2LP2-201ENST00000407594 1944 ntBASIC17.85■□□□□ 0.45
VMP1Q96GC9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.85■□□□□ 0.45
VMP1Q96GC9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.85■□□□□ 0.45
VMP1Q96GC9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VMP1Q96GC9 LINC01023-201ENST00000606054 436 ntBASIC17.85■□□□□ 0.45
VMP1Q96GC9 AC096733.2-201ENST00000609937 1394 ntBASIC17.85■□□□□ 0.45
VMP1Q96GC9 AC133561.5-201ENST00000635547 218 ntBASIC17.85■□□□□ 0.45
VMP1Q96GC9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VMP1Q96GC9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 AC018470.1-201ENST00000624790 3129 ntBASIC17.84■□□□□ 0.45
VMP1Q96GC9 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 AC104581.1-202ENST00000635932 2618 ntBASIC17.84■□□□□ 0.45
VMP1Q96GC9 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 AC211429.1-201ENST00000415277 523 ntBASIC17.84■□□□□ 0.45
VMP1Q96GC9 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 MFAP1P1-201ENST00000442257 1255 ntBASIC17.84■□□□□ 0.45
VMP1Q96GC9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 NAPSB-206ENST00000562112 1266 ntBASIC17.84■□□□□ 0.45
VMP1Q96GC9 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
VMP1Q96GC9 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
VMP1Q96GC9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
VMP1Q96GC9 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.83■□□□□ 0.45
VMP1Q96GC9 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VMP1Q96GC9 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VMP1Q96GC9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.83■□□□□ 0.45
VMP1Q96GC9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
VMP1Q96GC9 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VMP1Q96GC9 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
VMP1Q96GC9 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC17.83■□□□□ 0.45
VMP1Q96GC9 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
VMP1Q96GC9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
VMP1Q96GC9 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.83■□□□□ 0.44
VMP1Q96GC9 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
VMP1Q96GC9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.83■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms