Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLRN3Q8NCR9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 OR6D1P-203ENST00000641209 4860 ntBASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 F11R-206ENST00000621309 4770 ntTSL 5 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLRN3Q8NCR9 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 SMUG1P1-201ENST00000590640 811 ntBASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 AC009237.3-201ENST00000393279 1427 ntBASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLRN3Q8NCR9 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 AL356740.2-201ENST00000601559 647 ntBASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.87□□□□□ -0.03
CLRN3Q8NCR9 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms