Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 HOXB1-202ENST00000577092 1414 ntBASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
HDDC3Q8N4P3 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 KRT8P10-201ENST00000450021 1447 ntBASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 AC104390.1-201ENST00000555663 520 ntBASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 AL136038.4-201ENST00000603606 1261 ntBASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 AC010240.3-201ENST00000607688 395 ntBASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HDDC3Q8N4P3 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 AC034236.2-201ENST00000606662 1610 ntBASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 AL391807.1-203ENST00000604392 2365 ntBASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HDDC3Q8N4P3 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 HLA-F-220ENST00000434407 884 ntBASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 KRT17P6-201ENST00000453795 1220 ntBASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 AC011498.5-201ENST00000592027 486 ntBASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 AC006333.2-201ENST00000607957 2099 ntBASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HDDC3Q8N4P3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.67■□□□□ 0.58
HDDC3Q8N4P3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms