Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 EMBP1-201ENST00000458200 901 ntBASIC22.83■■□□□ 1.25
USP48Q86UV5 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC22.83■■□□□ 1.25
USP48Q86UV5 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC22.83■■□□□ 1.25
USP48Q86UV5 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
USP48Q86UV5 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC22.83■■□□□ 1.24
USP48Q86UV5 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.24
USP48Q86UV5 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC22.83■■□□□ 1.24
USP48Q86UV5 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC22.82■■□□□ 1.24
USP48Q86UV5 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC22.82■■□□□ 1.24
USP48Q86UV5 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
USP48Q86UV5 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC22.82■■□□□ 1.24
USP48Q86UV5 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC22.82■■□□□ 1.24
USP48Q86UV5 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
USP48Q86UV5 IFNL4P1-201ENST00000607083 540 ntBASIC22.82■■□□□ 1.24
USP48Q86UV5 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC22.82■■□□□ 1.24
USP48Q86UV5 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
USP48Q86UV5 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC22.82■■□□□ 1.24
USP48Q86UV5 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC22.82■■□□□ 1.24
USP48Q86UV5 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
USP48Q86UV5 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC22.82■■□□□ 1.24
USP48Q86UV5 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
USP48Q86UV5 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
USP48Q86UV5 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 AL022342.1-201ENST00000400363 863 ntBASIC22.81■■□□□ 1.24
USP48Q86UV5 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
USP48Q86UV5 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC22.81■■□□□ 1.24
USP48Q86UV5 CALM1-205ENST00000553542 877 ntTSL 5 BASIC22.81■■□□□ 1.24
USP48Q86UV5 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC22.81■■□□□ 1.24
USP48Q86UV5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
USP48Q86UV5 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC22.81■■□□□ 1.24
USP48Q86UV5 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
USP48Q86UV5 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC22.8■■□□□ 1.24
USP48Q86UV5 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC22.8■■□□□ 1.24
USP48Q86UV5 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC22.8■■□□□ 1.24
USP48Q86UV5 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC22.8■■□□□ 1.24
USP48Q86UV5 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC22.8■■□□□ 1.24
USP48Q86UV5 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC22.8■■□□□ 1.24
USP48Q86UV5 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC22.8■■□□□ 1.24
USP48Q86UV5 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 AP002414.4-201ENST00000589764 1148 ntBASIC22.8■■□□□ 1.24
USP48Q86UV5 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC22.8■■□□□ 1.24
USP48Q86UV5 AL031008.1-201ENST00000619963 541 ntBASIC22.8■■□□□ 1.24
USP48Q86UV5 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
USP48Q86UV5 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 NEFHP1-201ENST00000412845 2629 ntBASIC22.79■■□□□ 1.24
USP48Q86UV5 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC22.79■■□□□ 1.24
USP48Q86UV5 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.79■■□□□ 1.24
USP48Q86UV5 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC22.79■■□□□ 1.24
USP48Q86UV5 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC22.79■■□□□ 1.24
USP48Q86UV5 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC22.79■■□□□ 1.24
USP48Q86UV5 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC22.79■■□□□ 1.24
USP48Q86UV5 NUS1P1-201ENST00000446295 882 ntBASIC22.79■■□□□ 1.24
USP48Q86UV5 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC22.79■■□□□ 1.24
USP48Q86UV5 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC22.79■■□□□ 1.24
USP48Q86UV5 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC22.79■■□□□ 1.24
USP48Q86UV5 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC22.79■■□□□ 1.24
USP48Q86UV5 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC22.79■■□□□ 1.24
USP48Q86UV5 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
USP48Q86UV5 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC22.79■■□□□ 1.24
USP48Q86UV5 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
USP48Q86UV5 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms