Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 HES4-204ENST00000484667 667 ntTSL 3 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 NORAD-201ENST00000565493 5339 ntBASIC11.67□□□□□ -0.54
LINC00643Q86TS7 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 AP001271.2-201ENST00000624018 1556 ntBASIC11.67□□□□□ -0.54
LINC00643Q86TS7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
LINC00643Q86TS7 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.66□□□□□ -0.54
LINC00643Q86TS7 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 C8orf49-201ENST00000525043 1968 ntBASIC11.65□□□□□ -0.54
LINC00643Q86TS7 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 LONRF2P2-201ENST00000439212 571 ntBASIC11.65□□□□□ -0.54
LINC00643Q86TS7 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
LINC00643Q86TS7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
LINC00643Q86TS7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.55
LINC00643Q86TS7 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC11.65□□□□□ -0.55
LINC00643Q86TS7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
LINC00643Q86TS7 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
LINC00643Q86TS7 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms