Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 AC105339.3-201ENST00000560043 636 ntBASIC10.16□□□□□ -0.78
UBR4Q5T4S7 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 AC097374.2-201ENST00000618617 1306 ntBASIC10.16□□□□□ -0.78
UBR4Q5T4S7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 CITED2-204ENST00000618718 901 ntTSL 2 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
UBR4Q5T4S7 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 FAM207CP-201ENST00000443486 507 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 SPDYE22P-201ENST00000582158 798 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AL139099.5-201ENST00000635274 300 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 GPR89P-201ENST00000407924 1495 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AP003733.1-201ENST00000491725 852 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AC018845.2-201ENST00000568326 409 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 MIR4538-201ENST00000581377 78 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AC008735.5-201ENST00000623544 497 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 AC005593.1-201ENST00000624894 515 ntBASIC10.15□□□□□ -0.78
UBR4Q5T4S7 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
UBR4Q5T4S7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 MRPS18AP1-201ENST00000414458 589 ntBASIC10.15□□□□□ -0.79
UBR4Q5T4S7 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.79
UBR4Q5T4S7 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 VPS29-207ENST00000549970 818 ntTSL 3 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AC004835.2-201ENST00000603762 682 ntBASIC10.14□□□□□ -0.79
UBR4Q5T4S7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 PGF-202ENST00000405431 666 ntTSL 5 BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 AL358472.5-202ENST00000641448 1267 ntBASIC10.14□□□□□ -0.79
UBR4Q5T4S7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
UBR4Q5T4S7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC10.14□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms