Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.92■□□□□ 0.62
USP39Q53GS9 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC18.92■□□□□ 0.62
USP39Q53GS9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.92■□□□□ 0.62
USP39Q53GS9 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.92■□□□□ 0.62
USP39Q53GS9 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
USP39Q53GS9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
USP39Q53GS9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.91■□□□□ 0.62
USP39Q53GS9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
USP39Q53GS9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 FDX1P1-201ENST00000449115 551 ntBASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 KRT8P26-201ENST00000534154 1276 ntBASIC18.91■□□□□ 0.62
USP39Q53GS9 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
USP39Q53GS9 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.91■□□□□ 0.62
USP39Q53GS9 MIR3180-1-201ENST00000580374 94 ntBASIC18.91■□□□□ 0.62
USP39Q53GS9 MIR3180-3-201ENST00000584616 94 ntBASIC18.91■□□□□ 0.62
USP39Q53GS9 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.91■□□□□ 0.62
USP39Q53GS9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 AC098818.2-201ENST00000564925 2320 ntBASIC18.91■□□□□ 0.62
USP39Q53GS9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.91■□□□□ 0.62
USP39Q53GS9 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.91■□□□□ 0.62
USP39Q53GS9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.91■□□□□ 0.62
USP39Q53GS9 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
USP39Q53GS9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
USP39Q53GS9 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
USP39Q53GS9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
USP39Q53GS9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.9■□□□□ 0.62
USP39Q53GS9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.9■□□□□ 0.62
USP39Q53GS9 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 NUS1P1-201ENST00000446295 882 ntBASIC18.9■□□□□ 0.62
USP39Q53GS9 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.9■□□□□ 0.62
USP39Q53GS9 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.9■□□□□ 0.62
USP39Q53GS9 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.9■□□□□ 0.62
USP39Q53GS9 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.9■□□□□ 0.62
USP39Q53GS9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC18.9■□□□□ 0.62
USP39Q53GS9 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.9■□□□□ 0.62
USP39Q53GS9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.9■□□□□ 0.62
USP39Q53GS9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
USP39Q53GS9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
USP39Q53GS9 AC036111.1-201ENST00000533973 1582 ntBASIC18.89■□□□□ 0.62
USP39Q53GS9 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.89■□□□□ 0.62
USP39Q53GS9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.89■□□□□ 0.61
USP39Q53GS9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.89■□□□□ 0.61
USP39Q53GS9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
USP39Q53GS9 ZNF815P-204ENST00000434898 1737 ntBASIC18.89■□□□□ 0.61
USP39Q53GS9 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USP39Q53GS9 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms