Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
PCDH1Q08174 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18■□□□□ 0.47
PCDH1Q08174 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PCDH1Q08174 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDH1Q08174 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDH1Q08174 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDH1Q08174 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDH1Q08174 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.99■□□□□ 0.47
PCDH1Q08174 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.99■□□□□ 0.47
PCDH1Q08174 MCCD1P1-208ENST00000445732 328 ntBASIC17.99■□□□□ 0.47
PCDH1Q08174 TSPY17P-201ENST00000450329 467 ntBASIC17.99■□□□□ 0.47
PCDH1Q08174 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.99■□□□□ 0.47
PCDH1Q08174 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.99■□□□□ 0.47
PCDH1Q08174 MIR4497-201ENST00000583208 89 ntBASIC17.99■□□□□ 0.47
PCDH1Q08174 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDH1Q08174 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDH1Q08174 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PCDH1Q08174 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
PCDH1Q08174 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDH1Q08174 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.99■□□□□ 0.47
PCDH1Q08174 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PCDH1Q08174 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.99■□□□□ 0.47
PCDH1Q08174 BICD1-207ENST00000551848 1962 ntBASIC17.99■□□□□ 0.47
PCDH1Q08174 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 AC092338.2-201ENST00000568827 1415 ntBASIC17.98■□□□□ 0.47
PCDH1Q08174 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PCDH1Q08174 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
PCDH1Q08174 AP000593.1-201ENST00000393668 712 ntBASIC17.98■□□□□ 0.47
PCDH1Q08174 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
PCDH1Q08174 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDH1Q08174 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDH1Q08174 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.98■□□□□ 0.47
PCDH1Q08174 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.98■□□□□ 0.47
PCDH1Q08174 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDH1Q08174 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDH1Q08174 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 AL162741.1-201ENST00000565563 1558 ntBASIC17.98■□□□□ 0.47
PCDH1Q08174 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
PCDH1Q08174 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.98■□□□□ 0.47
PCDH1Q08174 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
PCDH1Q08174 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDH1Q08174 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 MIR4674-201ENST00000582457 87 ntBASIC17.97■□□□□ 0.47
PCDH1Q08174 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PCDH1Q08174 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
PCDH1Q08174 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDH1Q08174 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
PCDH1Q08174 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.97■□□□□ 0.47
PCDH1Q08174 AL499627.1-201ENST00000569373 2188 ntBASIC17.97■□□□□ 0.47
PCDH1Q08174 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.97■□□□□ 0.47
PCDH1Q08174 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
PCDH1Q08174 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.96■□□□□ 0.47
PCDH1Q08174 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
PCDH1Q08174 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms