Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL7A1Q02388 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL7A1Q02388 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
COL7A1Q02388 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC13.32□□□□□ -0.28
COL7A1Q02388 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL7A1Q02388 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.32□□□□□ -0.28
COL7A1Q02388 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC13.32□□□□□ -0.28
COL7A1Q02388 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.32□□□□□ -0.28
COL7A1Q02388 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
COL7A1Q02388 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC13.32□□□□□ -0.28
COL7A1Q02388 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC13.32□□□□□ -0.28
COL7A1Q02388 PRR29-209ENST00000582540 967 ntTSL 2 BASIC13.32□□□□□ -0.28
COL7A1Q02388 AC024563.2-201ENST00000603282 481 ntBASIC13.32□□□□□ -0.28
COL7A1Q02388 AL596442.2-201ENST00000610240 980 ntBASIC13.32□□□□□ -0.28
COL7A1Q02388 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL7A1Q02388 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC13.32□□□□□ -0.28
COL7A1Q02388 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC13.31□□□□□ -0.28
COL7A1Q02388 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 LBX2-AS1-202ENST00000603175 2083 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL7A1Q02388 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 POM121L3P-201ENST00000419331 1163 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 AC040169.1-201ENST00000565382 521 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC13.31□□□□□ -0.28
COL7A1Q02388 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 AC006333.2-201ENST00000607957 2099 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.31□□□□□ -0.28
COL7A1Q02388 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 USP39-204ENST00000409766 2033 ntTSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 LINC01521-201ENST00000504184 1943 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 AL137060.1-201ENST00000618151 2648 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.31□□□□□ -0.28
COL7A1Q02388 AC007967.2-201ENST00000432613 625 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 YBX1P5-201ENST00000509441 847 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.31□□□□□ -0.28
COL7A1Q02388 IGHV3-41-201ENST00000613121 348 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC13.31□□□□□ -0.28
COL7A1Q02388 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 AL353692.3-201ENST00000407031 1396 ntBASIC13.31□□□□□ -0.28
COL7A1Q02388 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
COL7A1Q02388 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL7A1Q02388 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 LBH-203ENST00000404397 543 ntTSL 4 BASIC13.3□□□□□ -0.28
COL7A1Q02388 CNN2P11-201ENST00000429351 262 ntBASIC13.3□□□□□ -0.28
COL7A1Q02388 ORC5-208ENST00000626700 344 ntTSL 3 BASIC13.3□□□□□ -0.28
COL7A1Q02388 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
COL7A1Q02388 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC13.3□□□□□ -0.28
COL7A1Q02388 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.3□□□□□ -0.28
COL7A1Q02388 AC099778.1-201ENST00000568593 1911 ntBASIC13.3□□□□□ -0.28
COL7A1Q02388 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
COL7A1Q02388 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC13.3□□□□□ -0.28
COL7A1Q02388 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL7A1Q02388 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC13.3□□□□□ -0.28
COL7A1Q02388 HS6ST1P1-201ENST00000481504 1234 ntBASIC13.3□□□□□ -0.28
COL7A1Q02388 AP003733.1-201ENST00000491725 852 ntBASIC13.3□□□□□ -0.28
COL7A1Q02388 AC011840.4-201ENST00000578471 627 ntBASIC13.3□□□□□ -0.28
COL7A1Q02388 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC13.3□□□□□ -0.28
COL7A1Q02388 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 MED17-221ENST00000639724 2317 ntTSL 5 BASIC13.3□□□□□ -0.28
COL7A1Q02388 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
COL7A1Q02388 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
COL7A1Q02388 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC13.3□□□□□ -0.28
COL7A1Q02388 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL7A1Q02388 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms