Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA1P55317 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXA1P55317 MESTP1-201ENST00000404287 994 ntBASIC18.07■□□□□ 0.48
FOXA1P55317 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 FAM207BP-201ENST00000447172 505 ntBASIC18.07■□□□□ 0.48
FOXA1P55317 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
FOXA1P55317 B3GAT3P1-201ENST00000471720 806 ntBASIC18.07■□□□□ 0.48
FOXA1P55317 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA1P55317 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.07■□□□□ 0.48
FOXA1P55317 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.07■□□□□ 0.48
FOXA1P55317 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
FOXA1P55317 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXA1P55317 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXA1P55317 AC112777.1-201ENST00000540175 1423 ntBASIC18.06■□□□□ 0.48
FOXA1P55317 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
FOXA1P55317 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
FOXA1P55317 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXA1P55317 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 MIR6786-201ENST00000616843 113 ntBASIC18.06■□□□□ 0.48
FOXA1P55317 AC008622.2-201ENST00000617006 1229 ntBASIC18.06■□□□□ 0.48
FOXA1P55317 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXA1P55317 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXA1P55317 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 AC008556.1-201ENST00000610908 2040 ntBASIC18.06■□□□□ 0.48
FOXA1P55317 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
FOXA1P55317 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXA1P55317 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.05■□□□□ 0.48
FOXA1P55317 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.05■□□□□ 0.48
FOXA1P55317 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 ESPNP-201ENST00000270691 2015 ntBASIC18.05■□□□□ 0.48
FOXA1P55317 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.05■□□□□ 0.48
FOXA1P55317 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.05■□□□□ 0.48
FOXA1P55317 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.05■□□□□ 0.48
FOXA1P55317 RARRES2P10-201ENST00000564312 460 ntBASIC18.05■□□□□ 0.48
FOXA1P55317 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.05■□□□□ 0.48
FOXA1P55317 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
FOXA1P55317 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.05■□□□□ 0.48
FOXA1P55317 AC073195.1-201ENST00000607241 877 ntBASIC18.05■□□□□ 0.48
FOXA1P55317 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.05■□□□□ 0.48
FOXA1P55317 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
FOXA1P55317 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.05■□□□□ 0.48
FOXA1P55317 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.05■□□□□ 0.48
FOXA1P55317 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
FOXA1P55317 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.05■□□□□ 0.48
FOXA1P55317 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
FOXA1P55317 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
FOXA1P55317 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.04■□□□□ 0.48
FOXA1P55317 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
FOXA1P55317 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.04■□□□□ 0.48
FOXA1P55317 AC093677.2-201ENST00000600169 1863 ntBASIC18.04■□□□□ 0.48
FOXA1P55317 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
FOXA1P55317 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
FOXA1P55317 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
FOXA1P55317 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.04■□□□□ 0.48
FOXA1P55317 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.04■□□□□ 0.48
FOXA1P55317 AL359736.2-201ENST00000621992 437 ntBASIC18.04■□□□□ 0.48
FOXA1P55317 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms