Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL512604.3-201ENST00000569583 964 ntBASIC18.56■□□□□ 0.56
MSH3P20585 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
MSH3P20585 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.56■□□□□ 0.56
MSH3P20585 AC068587.9-201ENST00000641814 219 ntBASIC18.56■□□□□ 0.56
MSH3P20585 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH3P20585 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 AL109659.2-201ENST00000606809 1674 ntBASIC18.56■□□□□ 0.56
MSH3P20585 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH3P20585 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.56■□□□□ 0.56
MSH3P20585 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.56■□□□□ 0.56
MSH3P20585 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSH3P20585 AC020763.4-201ENST00000623414 4170 ntBASIC18.56■□□□□ 0.56
MSH3P20585 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH3P20585 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSH3P20585 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSH3P20585 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSH3P20585 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSH3P20585 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.55■□□□□ 0.56
MSH3P20585 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSH3P20585 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.55■□□□□ 0.56
MSH3P20585 SLC25A3P1-201ENST00000443844 931 ntBASIC18.55■□□□□ 0.56
MSH3P20585 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.55■□□□□ 0.56
MSH3P20585 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.55■□□□□ 0.56
MSH3P20585 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
MSH3P20585 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.55■□□□□ 0.56
MSH3P20585 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
MSH3P20585 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.54■□□□□ 0.56
MSH3P20585 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 AC008556.1-201ENST00000610908 2040 ntBASIC18.54■□□□□ 0.56
MSH3P20585 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 ATP5G1P1-201ENST00000448724 379 ntBASIC18.54■□□□□ 0.56
MSH3P20585 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.54■□□□□ 0.56
MSH3P20585 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 MIR3180-5-201ENST00000583743 153 ntBASIC18.54■□□□□ 0.56
MSH3P20585 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.54■□□□□ 0.56
MSH3P20585 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 AC093525.10-201ENST00000625130 1569 ntBASIC18.54■□□□□ 0.56
MSH3P20585 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.54■□□□□ 0.56
MSH3P20585 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSH3P20585 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
MSH3P20585 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.53■□□□□ 0.56
MSH3P20585 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.53■□□□□ 0.56
MSH3P20585 AL137013.1-201ENST00000432946 1228 ntBASIC18.53■□□□□ 0.56
MSH3P20585 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.53■□□□□ 0.56
MSH3P20585 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.53■□□□□ 0.56
MSH3P20585 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
MSH3P20585 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
MSH3P20585 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.53■□□□□ 0.56
MSH3P20585 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
MSH3P20585 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
MSH3P20585 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
MSH3P20585 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MSH3P20585 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms